BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3529.p
         (318 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981579|ref|YP_001354189.1| segregation and condensation pr...   326   1e-90

>gi|152981579|ref|YP_001354189.1| segregation and condensation
           protein B [Janthinobacterium sp. Marseille]
          Length = 322

 Score =  326 bits (835), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 180/312 (57%), Positives = 209/312 (66%), Gaps = 20/312 (6%)

Query: 1   MNIAEAKKVLETALLCTHEPLSINDLKKLYVDPESQESSDINTETIRQMLEELRADWADK 60
           MNIAEAKKVLETALLC HEPLSIND+KKL+V+   +    I T+ I+QMLEELR DW DK
Sbjct: 1   MNIAEAKKVLETALLCAHEPLSINDMKKLFVET-GETDGQIGTDEIKQMLEELRDDWVDK 59

Query: 61  GVEVVSLSTGWRFQSRKEMKVYLERLNPEKPPKYTRATLETLAIIAYRQPVTRGDIEEIR 120
           G+EVVSLSTGWRFQSR EMK+YLERLNPEKPPKY+ ATLETLAII YRQPVTRGDIEEIR
Sbjct: 60  GIEVVSLSTGWRFQSRPEMKIYLERLNPEKPPKYSHATLETLAIITYRQPVTRGDIEEIR 119

Query: 121 GVAVNTQTIRMLEDRGWIESIGHRDVPGRPALFATTRKFLDDLGLSSLEELPPLQQVSGE 180
           GV VN+QTI+MLEDRGWIESIGHRDVPGRPALFATT+ FLDDLGL+SL++LPPLQQV   
Sbjct: 120 GVTVNSQTIKMLEDRGWIESIGHRDVPGRPALFATTKHFLDDLGLTSLDQLPPLQQVEKG 179

Query: 181 AAAQGALLELQALEGGVAALAEQD------------EQEPQEGQADTVDASDTQDVKEVN 228
                ALLE+Q LE  +    +Q             E   ++GQADT       +  E+ 
Sbjct: 180 DMQGSALLEMQGLEAELQEHLDQTAIDFADTEAATAEVPAEDGQADTTPTEAVAEAIEIE 239

Query: 229 EMEETQPAEQSPAAEHTDIAAA---AGEERAAGSEDASPAVQE-PFEQDVAVTGTDA--- 281
            ++      +   AE TDI         E A G EDA+    E    +  A   TDA   
Sbjct: 240 SVDAGIVEAEVTVAEATDIEVVETTVVAEEAEGVEDAATQTTELSTSESEAAIPTDAAAP 299

Query: 282 NEAAVEAAGEHN 293
           +   V+   EHN
Sbjct: 300 DLTVVDVPSEHN 311


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.307    0.125    0.344 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 568,228
Number of extensions: 18473
Number of successful extensions: 61
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 235
Effective length of database: 914,170
Effective search space: 214829950
Effective search space used: 214829950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 129 (54.3 bits)