BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3526.p
         (519 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980158|ref|YP_001354186.1| N utilization substance protein...   926   0.0  

>gi|152980158|ref|YP_001354186.1| N utilization substance protein A
           [Janthinobacterium sp. Marseille]
          Length = 519

 Score =  926 bits (2393), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/519 (88%), Positives = 496/519 (95%)

Query: 1   MSREILLLVDALAREKNVDKEVVFGALEHALAQATKKRYEGEVDIRVSIDRESGEFESFR 60
           MSREILLLVDALAREKNVDK++VFGALEHALAQATKKRYEG+VDIRVSIDRE+GEFESFR
Sbjct: 1   MSREILLLVDALAREKNVDKDIVFGALEHALAQATKKRYEGDVDIRVSIDRETGEFESFR 60

Query: 61  RWHVVPDEAGLQLPDQEVLLFEAKEQFPDIEVDEYIEDPIESVEFGRRFAQDTKQVVLQR 120
           RWHVVPDEAGLQLPDQE+L FEAKEQ  DIEVD+YIE+PIESV+FGRRFAQDTKQVVLQR
Sbjct: 61  RWHVVPDEAGLQLPDQEILHFEAKEQIGDIEVDDYIEEPIESVDFGRRFAQDTKQVVLQR 120

Query: 121 IRDAEREQILADFLARGDALVTGTIKRMERGDAIIESGKIEARLPRDQMIPKENLRIGDR 180
           IRDAEREQILADFL RGD+LVTGTIKRMERGDAI+ESG+IEARLPRDQ IPKENLRIGDR
Sbjct: 121 IRDAEREQILADFLERGDSLVTGTIKRMERGDAIVESGRIEARLPRDQTIPKENLRIGDR 180

Query: 181 VRAYILRVDRGARGPQVILSRTAPEFIMKLFELEVPEIEQGSLEIKSAARDPGVRAKIAV 240
           VRAYILR+DR ARGPQVILSRTAPEFIMKLFELEVPEIEQG LEIKSAARD GVRAKIAV
Sbjct: 181 VRAYILRIDRNARGPQVILSRTAPEFIMKLFELEVPEIEQGLLEIKSAARDAGVRAKIAV 240

Query: 241 YTADKRIDPIGTCVGMRGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVTSIVV 300
           +T+DKRIDPIGTCVGMRGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANV+SIVV
Sbjct: 241 FTSDKRIDPIGTCVGMRGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVSSIVV 300

Query: 301 DEEKHAMDVVVDEENLAIAIGRGGQNVRLAAELTRWQINIMTAEESADKSAAETALIRTL 360
           DEEKHAMDVVVDEENLAIAIGRGGQNVRLA+ELT WQINIMTAEESADKS  ETA IRTL
Sbjct: 301 DEEKHAMDVVVDEENLAIAIGRGGQNVRLASELTGWQINIMTAEESADKSQLETAAIRTL 360

Query: 361 FMEKLDVDQEVADILVEEGFSTLEEIAYVPINEMLEIESFDEETVNELRNRARDALVTEA 420
           FMEKLDVDQEVADILV+EGF++LEEIAYVPI+EML+IESFDE+TVNELRNRARDALVTEA
Sbjct: 361 FMEKLDVDQEVADILVDEGFASLEEIAYVPISEMLDIESFDEDTVNELRNRARDALVTEA 420

Query: 421 IASEEGLDGMDEELINFEGLDRVLAGKLGLAGVKTLPAFAGLAYDEFGAILALPSERARQ 480
           IASEEGL+GM+E L N EG+DRV+AGKLGLAG+KTL AF+ LAYDEFGAILALP++RARQ
Sbjct: 421 IASEEGLEGMEEALANLEGMDRVMAGKLGLAGIKTLAAFSALAYDEFGAILALPADRARQ 480

Query: 481 LIENAFEDVTDDEMKLIDSKYDERAKALQAKAWSAVEGR 519
           LIE+ F+DVTD+EMKLID+KYD+ AKALQAK WS  E +
Sbjct: 481 LIEDEFKDVTDEEMKLIDAKYDDHAKALQAKVWSLAEAK 519


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.135    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,162,262
Number of extensions: 49724
Number of successful extensions: 186
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 1,221,021
Length adjustment: 87
Effective length of query: 432
Effective length of database: 899,382
Effective search space: 388533024
Effective search space used: 388533024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)