BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3525.p (960 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980794|ref|YP_001354185.1| translation initiation factor I... 1487 0.0 gi|152981046|ref|YP_001353057.1| GTP-binding protein LepA [Janth... 81 3e-16 gi|152980795|ref|YP_001354182.1| GTP-binding elongation factor [... 66 1e-11 gi|152981083|ref|YP_001355117.1| elongation factor Tu [Janthinob... 63 7e-11 gi|152981101|ref|YP_001355103.1| elongation factor Tu [Janthinob... 63 7e-11 >gi|152980794|ref|YP_001354185.1| translation initiation factor IF-2 [Janthinobacterium sp. Marseille] Length = 937 Score = 1487 bits (3850), Expect = 0.0, Method: Compositional matrix adjust. Identities = 783/971 (80%), Positives = 843/971 (86%), Gaps = 45/971 (4%) Query: 1 MASNNVAQFATELKMPADLLLTQLRSAGVEKSSASDSLSKEDKDRLLEHLRRSRGAAPEG 60 MASNNVAQFATELKMPAD+LLTQLR AGVEKSS SD LSK DKD+LL+HLRR+ G AP+G Sbjct: 1 MASNNVAQFATELKMPADVLLTQLRDAGVEKSSTSDELSKADKDKLLDHLRRAHGVAPDG 60 Query: 61 DKKKITLTRKETTEIKQADATGKSRTIQVEVRKKRTFIKRDEPSVEETAARAAAIQRDAA 120 +KKKITLTRKETTEIKQADATGKSRTIQVEVRKKRTF+KRDE + EE +AAA D A Sbjct: 61 EKKKITLTRKETTEIKQADATGKSRTIQVEVRKKRTFVKRDESTPEEAPVKAAAPVIDEA 120 Query: 121 AEAQEREQEE------ARRQAELKAQQERLAQLEAERAAQAKAAELEQQRAREAAEAEAK 174 + E+ AR++A+L+ +QERLA+LEAE+ AQAKA + +Q EA +A+A Sbjct: 121 EIERRAEEARRQAELIARQEADLREKQERLAKLEAEKEAQAKALKQAEQAEAEAQKADA- 179 Query: 175 RQAAEAAAAAQAEKAKAAAAAAAPAPAAAAAPAAPAAVDPAVEEKKRAAAEEAKKKA--- 231 A P A + A EEKKR AAEE+KKKA Sbjct: 180 -----------------------------AKPVEAKADESAQEEKKRVAAEESKKKAAQL 210 Query: 232 -DAAAKEAADRAAAAERARKAVEDEVAQIKAMMNAPRRVIKAPEPAAPAAKTSE-GTLHK 289 AAKEA+++A A E ARKAV DEVAQIKAMMNAPRR IKAPEPAAP A GTLHK Sbjct: 211 AKDAAKEASEKAVATEAARKAVADEVAQIKAMMNAPRRAIKAPEPAAPVAAKPAEGTLHK 270 Query: 290 PAAGAKPAEKKDDKKPAVAADKKSIKSANVSSTWQDDAKKRGAGGMKSRGATGGGGRDGW 349 PA K EKKD+KKPAV ADKKSIKSANVSSTWQDDAKKRGAG +K+RG TGGG RDGW Sbjct: 271 PA-DKKAGEKKDEKKPAVTADKKSIKSANVSSTWQDDAKKRGAG-IKTRGNTGGG-RDGW 327 Query: 350 RAGPKGRRHSHGDDQRESNFQVPTEAVVHDVYVPETITVAEVAHKMAVKASEVIKHLMKL 409 RAGPKGRR SH DD RESNFQ PTEAVV DV+VPETITVAE+AHKM+VKASEVIKHLMKL Sbjct: 328 RAGPKGRRPSHHDD-RESNFQAPTEAVVKDVHVPETITVAELAHKMSVKASEVIKHLMKL 386 Query: 410 GQMVTINQVLDQETAMIVVEEMGHRAHAAKLDDPEALLVEGEEHADAEALPRAPVVTVMG 469 GQM TINQVLDQETAMI+VEEMGH AHAAKLDDPEALL +GEEHAD EALPRAPVVTVMG Sbjct: 387 GQMCTINQVLDQETAMILVEEMGHTAHAAKLDDPEALLEQGEEHADIEALPRAPVVTVMG 446 Query: 470 HVDHGKTSLLDYIRRTKVASGEAGGITQHIGAYHVETPRGMITFLDTPGHEAFTAMRARG 529 HVDHGKTSLLDYIRR KVASGEAGGITQHIGAYHVETPRGMITFLDTPGHEAFTAMRARG Sbjct: 447 HVDHGKTSLLDYIRRAKVASGEAGGITQHIGAYHVETPRGMITFLDTPGHEAFTAMRARG 506 Query: 530 AKATDIVILVVAADDGVMPQTKEAIAHAKAGGVPLVVAINKIDKPGANPDRVKQELIAEE 589 AKATDIVILVVAADDGVMPQTKEAIAHAKA GVPLVVAINKIDKPGAN DRVKQELIAE+ Sbjct: 507 AKATDIVILVVAADDGVMPQTKEAIAHAKAAGVPLVVAINKIDKPGANMDRVKQELIAEQ 566 Query: 590 VVPEEYGGDAPFIAVSAKTGEGIDSLLENVLLQAEVLELKAPVDVPARGLVIEAKLDKGR 649 VVPEEYGGD+PF+ VSAKTGEGID+LLE VLLQAEVLELKAPVD PARGLV+EAKLDKGR Sbjct: 567 VVPEEYGGDSPFVPVSAKTGEGIDALLEQVLLQAEVLELKAPVDAPARGLVVEAKLDKGR 626 Query: 650 GPVATILVQSGTLKRGDVVLAGSAYGRVRAMLDENGKNIAEAGPSLPVEIQGLTEVPSAG 709 GPVATILVQSGTLKRGDVVLAGSAYGRVRAMLDENGK+I EAGPS+PVEIQGLTEVP+AG Sbjct: 627 GPVATILVQSGTLKRGDVVLAGSAYGRVRAMLDENGKSITEAGPSIPVEIQGLTEVPNAG 686 Query: 710 EEVVVMTDERKAREIGLFRQGKFRDVKLAKQQAAKLENMFDQMTEGEVKTLPMIIKTDVQ 769 EEV+VM DERKAREIGLFRQGKFRDVKLAKQQAAKLENMF+ M EGEVK LPMIIKTDVQ Sbjct: 687 EEVMVMADERKAREIGLFRQGKFRDVKLAKQQAAKLENMFENMGEGEVKNLPMIIKTDVQ 746 Query: 770 GSQEALVQSLQKLSTAEVRVQVVHAAVGGISENDVNLAVASKAVIIGFNTRADASARKLA 829 GSQEALV SLQKLST+EVRVQVVHAAVGGISE+DVNLAVASKAVIIGFNTRADASARKLA Sbjct: 747 GSQEALVGSLQKLSTSEVRVQVVHAAVGGISESDVNLAVASKAVIIGFNTRADASARKLA 806 Query: 830 EASGVDIRYYNIIYDAVDEVKAAMSGMLSPEKREQALGLVEIRQVFVVSKVGSIAGCYVL 889 EA+GVDIRYYNIIYDAVDE+KAAMSGML+PEKREQALGLVEIRQV +VSKVG+IAGCYVL Sbjct: 807 EANGVDIRYYNIIYDAVDEIKAAMSGMLAPEKREQALGLVEIRQVILVSKVGAIAGCYVL 866 Query: 890 EGLVKRGSQVRLLRNNVVVWTGELDSLKRFKDDVKEVKSGFECGLSLKGYNDIEVGDQLE 949 EG+ KRGS VRLLR+NVVVWTGELDSLKRFKDDVKEVK+GFECGL+LK +NDI+ GDQLE Sbjct: 867 EGVAKRGSSVRLLRDNVVVWTGELDSLKRFKDDVKEVKAGFECGLTLKNFNDIKEGDQLE 926 Query: 950 IFEVQEVARTL 960 +FEVQE+ARTL Sbjct: 927 VFEVQEIARTL 937 >gi|152981046|ref|YP_001353057.1| GTP-binding protein LepA [Janthinobacterium sp. Marseille] Length = 597 Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 69/231 (29%), Positives = 109/231 (47%), Gaps = 41/231 (17%) Query: 466 TVMGHVDHGKTSLLDYIRRTKVASGEAGGIT------QHIGAYHVETPRGM--------- 510 +++ H+DHGK++L D I + GG++ Q + + +E RG+ Sbjct: 8 SIIAHIDHGKSTLADRIIQL------CGGLSDREMEAQVLDSMDIERERGITIKAQTAAL 61 Query: 511 -----------ITFLDTPGHEAFTAMRARGAKATDIVILVVAADDGVMPQTKEAIAHAKA 559 + +DTPGH F+ +R A + +LVV A GV QT A Sbjct: 62 MYKARDGQVYNLNLIDTPGHVDFSYEVSRSLSACEGALLVVDASQGVEAQTVANCYTALD 121 Query: 560 GGVPLVVAINKIDKPGANPDRVKQELIAEEVVPEEYGGDAP-FIAVSAKTGEGIDSLLEN 618 GV +V +NKID P A+P E+ EEV+ G DA + SAKTG G+ +LE+ Sbjct: 122 LGVEVVPVLNKIDLPSADPANAIAEI--EEVI----GIDASEAVHCSAKTGLGVQDVLES 175 Query: 619 VLLQAEVLELKAPVDVPARGLVIEAKLDKGRGPVATILVQSGTLKRGDVVL 669 ++ +V K P + L++++ D G V + V +GTL+ D +L Sbjct: 176 LI--TKVPPPKGDATAPLQALIVDSWFDNYVGVVMLVRVMNGTLRPKDKIL 224 >gi|152980795|ref|YP_001354182.1| GTP-binding elongation factor [Janthinobacterium sp. Marseille] Length = 612 Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 16/132 (12%) Query: 465 VTVMGHVDHGKTSLLDYIRRTKVASGEAGGITQHI-GAYHVETPRGM------------- 510 + ++ HVDHGKT+L+D + R E + + + +E RG+ Sbjct: 11 IAIIAHVDHGKTTLVDQLLRQSGTFRENQQVDARVMDSNDIEKERGITILSKNCAVEYKG 70 Query: 511 --ITFLDTPGHEAFTAMRARGAKATDIVILVVAADDGVMPQTKEAIAHAKAGGVPLVVAI 568 I +DTPGH F R D V+L+V A +G MPQT+ A A G+ +V + Sbjct: 71 THINIVDTPGHADFGGEVERVLSMVDSVLLLVDAQEGPMPQTRFVTRKALALGLKPIVVV 130 Query: 569 NKIDKPGANPDR 580 NKID+ A+P + Sbjct: 131 NKIDRENADPQK 142 >gi|152981083|ref|YP_001355117.1| elongation factor Tu [Janthinobacterium sp. Marseille] Length = 396 Score = 63.2 bits (152), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 79/234 (33%), Positives = 103/234 (44%), Gaps = 37/234 (15%) Query: 465 VTVMGHVDHGKTSLLDYIRR--TKVASGEAGGITQ------------HIGAYHVE--TPR 508 V +GHVDHGKT+L I +K GEA G Q I HVE T Sbjct: 15 VGTIGHVDHGKTTLTAAIATVLSKKFGGEAKGYDQIDNAPEEKARGITINTSHVEYETES 74 Query: 509 GMITFLDTPGHEAFTAMRARGAKATDIVILVVAADDGVMPQTKEAIAHAKAGGVP-LVVA 567 +D PGH + GA D ILV +A DG MPQT+E I ++ GVP ++V Sbjct: 75 RHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAADGPMPQTREHILLSRQVGVPYIIVF 134 Query: 568 INKIDKPGANPDRVKQELIAEEV--VPEEY---GGDAPFIAVSAKTG-EGIDSLL--ENV 619 +NK D D EL+ EV + +Y G D P + SAK EG L + + Sbjct: 135 LNKAD---MVDDAELLELVEMEVRELLSKYEFPGDDLPIVKGSAKLALEGDTGPLGEQAI 191 Query: 620 LLQAEVLELKAPVDVPARG------LVIEAKLD-KGRGPVATILVQSGTLKRGD 666 L A L+ P P R L +E GRG V T ++ G +K G+ Sbjct: 192 LALANALDTYIP--TPERAVDGAFLLPVEDVFSISGRGTVVTGRIERGIIKVGE 243 >gi|152981101|ref|YP_001355103.1| elongation factor Tu [Janthinobacterium sp. Marseille] Length = 396 Score = 63.2 bits (152), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 79/234 (33%), Positives = 103/234 (44%), Gaps = 37/234 (15%) Query: 465 VTVMGHVDHGKTSLLDYIRR--TKVASGEAGGITQ------------HIGAYHVE--TPR 508 V +GHVDHGKT+L I +K GEA G Q I HVE T Sbjct: 15 VGTIGHVDHGKTTLTAAIATVLSKKFGGEAKGYDQIDNAPEEKARGITINTSHVEYETES 74 Query: 509 GMITFLDTPGHEAFTAMRARGAKATDIVILVVAADDGVMPQTKEAIAHAKAGGVP-LVVA 567 +D PGH + GA D ILV +A DG MPQT+E I ++ GVP ++V Sbjct: 75 RHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAADGPMPQTREHILLSRQVGVPYIIVF 134 Query: 568 INKIDKPGANPDRVKQELIAEEV--VPEEY---GGDAPFIAVSAKTG-EGIDSLL--ENV 619 +NK D D EL+ EV + +Y G D P + SAK EG L + + Sbjct: 135 LNKAD---MVDDAELLELVEMEVRELLSKYEFPGDDLPIVKGSAKLALEGDTGPLGEQAI 191 Query: 620 LLQAEVLELKAPVDVPARG------LVIEAKLD-KGRGPVATILVQSGTLKRGD 666 L A L+ P P R L +E GRG V T ++ G +K G+ Sbjct: 192 LALANALDTYIP--TPERAVDGAFLLPVEDVFSISGRGTVVTGRIERGIIKVGE 243 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.311 0.127 0.338 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,619,908 Number of extensions: 64621 Number of successful extensions: 221 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 215 Number of HSP's successfully gapped: 5 Length of query: 960 Length of database: 1,221,021 Length adjustment: 92 Effective length of query: 868 Effective length of database: 880,897 Effective search space: 764618596 Effective search space used: 764618596 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 134 (56.2 bits)