BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3523.p
         (130 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980431|ref|YP_001354184.1| ribosome-binding factor A [Jant...   230   2e-62

>gi|152980431|ref|YP_001354184.1| ribosome-binding factor A
           [Janthinobacterium sp. Marseille]
          Length = 128

 Score =  230 bits (587), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 110/128 (85%), Positives = 119/128 (92%)

Query: 1   MAKHSKSIPGRGLRVADQIQRDLSELIAFELKDPRVGMITITEVQVTPDYAHAKVFFTTL 60
           MAKHSKSIPGRGLRVADQIQRDLSE+IAFELKDPRVGMITITEVQVTPDYAHAKVFFT L
Sbjct: 1   MAKHSKSIPGRGLRVADQIQRDLSEIIAFELKDPRVGMITITEVQVTPDYAHAKVFFTML 60

Query: 61  VDNPEAIKNTLAGLRKASGYLRTQLGRRLTIHTLPELHFVHDNSTARGIEMSRLIDEANA 120
            D  + IKNT++GL  ASGY+R QLGRRLTIHTLPELHFVHD STARGIEMS+LIDEANA
Sbjct: 61  SDKKDDIKNTVSGLTAASGYIRGQLGRRLTIHTLPELHFVHDTSTARGIEMSKLIDEANA 120

Query: 121 TRAKDSDD 128
           +RAKD++D
Sbjct: 121 SRAKDAED 128


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.133    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 282,037
Number of extensions: 9821
Number of successful extensions: 33
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 1
Length of query: 130
Length of database: 1,221,021
Length adjustment: 73
Effective length of query: 57
Effective length of database: 951,140
Effective search space: 54214980
Effective search space used: 54214980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 124 (52.4 bits)