BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3521.p (613 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980795|ref|YP_001354182.1| GTP-binding elongation factor [... 1140 0.0 gi|152981046|ref|YP_001353057.1| GTP-binding protein LepA [Janth... 172 6e-44 gi|152980195|ref|YP_001355104.1| EF-G elongation factor [Janthin... 94 2e-20 gi|152979791|ref|YP_001352764.1| peptide chain release factor 3 ... 89 1e-18 gi|152981083|ref|YP_001355117.1| elongation factor Tu [Janthinob... 83 5e-17 >gi|152980795|ref|YP_001354182.1| GTP-binding elongation factor [Janthinobacterium sp. Marseille] Length = 612 Score = 1140 bits (2948), Expect = 0.0, Method: Compositional matrix adjust. Identities = 555/612 (90%), Positives = 586/612 (95%) Query: 1 MSNNIRAIRNIAIIAHVDHGKTTLVDQLLRQSGTFRDNQQVDNRVMDSNDIEKERGITIL 60 MSN+ RAIRNIAIIAHVDHGKTTLVDQLLRQSGTFR+NQQVD RVMDSNDIEKERGITIL Sbjct: 1 MSNSKRAIRNIAIIAHVDHGKTTLVDQLLRQSGTFRENQQVDARVMDSNDIEKERGITIL 60 Query: 61 SKNCAVEYKGTHINIVDTPGHADFGGEVERVLSMVDSVLLLVDAQEGPMPQTRFVTRKAL 120 SKNCAVEYKGTHINIVDTPGHADFGGEVERVLSMVDSVLLLVDAQEGPMPQTRFVTRKAL Sbjct: 61 SKNCAVEYKGTHINIVDTPGHADFGGEVERVLSMVDSVLLLVDAQEGPMPQTRFVTRKAL 120 Query: 121 ALGLKPIVVLNKIDRPGARAEWAINATFELFDKLGATEEQLDFPVIYASGLNGYASLDPE 180 ALGLKPIVV+NKIDR A + A+NATFELFDKLGAT+EQLDFP++YASG GYA L+ Sbjct: 121 ALGLKPIVVVNKIDRENADPQKAVNATFELFDKLGATDEQLDFPIVYASGFKGYAGLEDT 180 Query: 181 TREGNMEPLFDAILKYVPARKDDPDAPLQLQITSLEYSSYVGKIGVGRILAGRIKGGQDV 240 R+GNMEPLFDAIL++VPAR+DDPDAPLQLQITSLEYSSYVGKIGVGRILAGR+K QDV Sbjct: 181 VRDGNMEPLFDAILEHVPAREDDPDAPLQLQITSLEYSSYVGKIGVGRILAGRVKALQDV 240 Query: 241 VWMNGPEDKPTKARINQVLTFKGLERVLVDEALAGDIVLINGIEEIGIGSTICAPDAPNG 300 VWMNGPEDKPTKARINQVLTFKGL+RVLVDEALAGDIVLINGIEEI IGSTICA DAPNG Sbjct: 241 VWMNGPEDKPTKARINQVLTFKGLDRVLVDEALAGDIVLINGIEEISIGSTICAVDAPNG 300 Query: 301 LPMLKVDEPTLTMNFMVNTSPLAGREGKFVTTRQIRDRLEKELKSNMALRVVQAENDDST 360 LPMLKVDEPTLTMNFMVN+SPLAGREGKFVTTRQIRDRLEKELK+NMALRVVQ+E+DDST Sbjct: 301 LPMLKVDEPTLTMNFMVNSSPLAGREGKFVTTRQIRDRLEKELKANMALRVVQSEDDDST 360 Query: 361 YEVSGRGELHLTILIENMRREGFELAVSRPRVVFRMVDGVREEPYENLTVDVEETHQGGV 420 YEVSGRGELHLTILIENMRREGFE+AVSRPRVVF+MVDGVR EPYENLTVDVEE +QGGV Sbjct: 361 YEVSGRGELHLTILIENMRREGFEMAVSRPRVVFKMVDGVRHEPYENLTVDVEEVNQGGV 420 Query: 421 MEELGRRRGDLQNMEPDGKGRVRLEYHIPARGLIGFQGEFMTLTRGTGLMSHVFDDYKPV 480 MEELGRRRGDLQNMEPDGKGRVRLEY IPARGLIGFQGEFMTLTRGTGLMSHVFD+Y PV Sbjct: 421 MEELGRRRGDLQNMEPDGKGRVRLEYRIPARGLIGFQGEFMTLTRGTGLMSHVFDEYAPV 480 Query: 481 DTSKGELAGRRNGVLISQDDGAAVAYALWKLQDRGRMFVSHNDPVYEGMIIGIHSRDNDL 540 D +KG+L GRRNGVLISQDDGAAVAYA+WKLQDRGRMFVSHNDPVYEGMIIGIHSRDNDL Sbjct: 481 DNTKGDLGGRRNGVLISQDDGAAVAYAIWKLQDRGRMFVSHNDPVYEGMIIGIHSRDNDL 540 Query: 541 VVNPIKGKQLTNVRASGTDEAVRLVPPIELSLEYAVEFIEDDELVEVTPKSIRLRKRHLK 600 VVNPIKGKQLTNVR+SGTDEAVRLVPPIE+SLEYAVEFI+DDELVEVTPKSIRLRKR LK Sbjct: 541 VVNPIKGKQLTNVRSSGTDEAVRLVPPIEMSLEYAVEFIDDDELVEVTPKSIRLRKRFLK 600 Query: 601 EHERKKASREES 612 EHERKKA R+ + Sbjct: 601 EHERKKAGRDAA 612 >gi|152981046|ref|YP_001353057.1| GTP-binding protein LepA [Janthinobacterium sp. Marseille] Length = 597 Score = 172 bits (436), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 154/516 (29%), Positives = 250/516 (48%), Gaps = 70/516 (13%) Query: 8 IRNIAIIAHVDHGKTTLVDQLLRQSGTFRDNQQVDNRVMDSNDIEKERGITILSKNCAVE 67 IRN +IIAH+DHGK+TL D++++ G D ++++ +V+DS DIE+ERGITI ++ A+ Sbjct: 4 IRNFSIIAHIDHGKSTLADRIIQLCGGLSD-REMEAQVLDSMDIERERGITIKAQTAALM 62 Query: 68 YKG-----THINIVDTPGHADFGGEVERVLSMVDSVLLLVDAQEGPMPQTRFVTRKALAL 122 YK ++N++DTPGH DF EV R LS + LL+VDA +G QT AL L Sbjct: 63 YKARDGQVYNLNLIDTPGHVDFSYEVSRSLSACEGALLVVDASQGVEAQTVANCYTALDL 122 Query: 123 GLKPIVVLNKIDRPGARAEWAINATFELFDKLGATEEQLDFPVIYASGLNGYASLDPETR 182 G++ + VLNKID P A AI A E + A+E ++ S G D Sbjct: 123 GVEVVPVLNKIDLPSADPANAI-AEIEEVIGIDASE------AVHCSAKTGLGVQD---- 171 Query: 183 EGNMEPLFDAILKYVPARKDDPDAPLQLQITSLEYSSYVGKIGVGRILAGRIKGGQDVVW 242 + ++++ VP K D APLQ I + +YVG + + R++ G ++ +D + Sbjct: 172 ------VLESLITKVPPPKGDATAPLQALIVDSWFDNYVGVVMLVRVMNGTLR-PKDKIL 224 Query: 243 MNGPEDKPTKARINQVLTFKGLERVLVDEALAGDI-VLINGIEEI---GIGSTICAPDAP 298 + E + + V T K + R D AG + +I GI+E+ +G T+ P Sbjct: 225 LMASESQHLVESVG-VFTPKSISR---DTLTAGQVGFIIAGIKELKAAKVGDTVTLASRP 280 Query: 299 NG--LPMLKVDEPTLTMNFMVNTSPLAGREGKFVTTRQIRDRLEKELKSNMALRVVQAEN 356 LP K +P + P+ + +RD LEK LK N A + + E Sbjct: 281 AAEPLPGFKEVQPQVFAGLF----PVEANQ-----YDALRDSLEK-LKLNDAALMYEPEV 330 Query: 357 DDST---YEVSGRGELHLTILIENMRRE-GFELAVSRPRVVFRMV--DG----------- 399 + + G LH+ I+ E + RE +L + P V++ +V DG Sbjct: 331 SQALGFGFRCGFLGLLHMEIVQERLEREFDMDLITTAPTVIYEVVLRDGSILMVDNPSKM 390 Query: 400 -----VRE--EPYENLTVDVEETHQGGVMEELGRRRGDLQNMEPDGKGRVRLEYHIP-AR 451 + E EP + + + + + G V+ ++RG +M GK +V+L Y +P A Sbjct: 391 PDPSKIEEIREPIVTVNLYMPQEYVGSVITLCTQKRGIQMDMSYHGK-QVKLIYEMPMAE 449 Query: 452 GLIGFQGEFMTLTRGTGLMSHVFDDYKPVDTSKGEL 487 ++ F + + +RG M + F +Y+ D K ++ Sbjct: 450 IVLDFFDKLKSTSRGYASMDYEFKEYRSSDVVKVDM 485 >gi|152980195|ref|YP_001355104.1| EF-G elongation factor [Janthinobacterium sp. Marseille] Length = 702 Score = 94.4 bits (233), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 59/161 (36%), Positives = 86/161 (53%), Gaps = 16/161 (9%) Query: 5 IRAIRNIAIIAHVDHGKTTLVDQLLRQSGTFRDNQQVDN--RVMDSNDIEKERGITILSK 62 I RNI I AH+D GKTT +++L +G +V + MD + E+ERGITI S Sbjct: 7 IERYRNIGISAHIDAGKTTTTERVLFYTGVNHKLGEVHDGAATMDWMEQEQERGITITSA 66 Query: 63 NCAVEYKGT-------HINIVDTPGHADFGGEVERVLSMVDSVLLLVDAQEGPMPQTRFV 115 +KG HINI+DTPGH DF EVER + ++D ++ A G PQ+ V Sbjct: 67 ATTCFWKGMAGNFPAHHINIIDTPGHVDFTIEVERSMRVLDGACMVYCAVGGVQPQSETV 126 Query: 116 TRKALALGLKPIVVLNKIDRPGARAEWAINATFELFDKLGA 156 R+A + + +NK+DR GA F+++D++ A Sbjct: 127 WRQANKYKVPRLAFVNKMDRTGAN-------FFKVYDQMRA 160 Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 61/229 (26%), Positives = 104/229 (45%), Gaps = 33/229 (14%) Query: 186 MEPLFDAILKYVPARKDDP--------DAPLQLQITSLEYSS----------YVGKIGVG 227 ++ + D +++Y+P+ D P D P+ + E S +VG++ Sbjct: 275 VQAMLDGVVEYLPSPVDIPPVPGLNEDDEPVVRKAEDTEKFSALAFKIATDPFVGQLCFI 334 Query: 228 RILAGRIKGGQDVVWMNGPEDKPTKARINQVLTFKGLERVLVDEALAGDIVLINGIEEIG 287 R +G + G V N ++K K RI +++ +R + E LAGDI I G+++ Sbjct: 335 RCYSGTLNSGDTV--FNSVKEK--KERIGRIVQMHANQREEIKEMLAGDIAAIVGLKDTT 390 Query: 288 IGSTICAPDAPNGLPMLKVDEPTLTMNFMVNTSPLAGREGKFVTTRQIRDRLEKELKSNM 347 G T+C A L + EP ++ T + G + +RL E + Sbjct: 391 TGDTLCDDKAIVVLERMIFPEPVISQAVEPKTKADQEKMGLAL------NRLAAE---DP 441 Query: 348 ALRVVQAENDDSTYEVSGRGELHLTILIENMRRE-GFELAVSRPRVVFR 395 + RV E T ++G GELHL I+++ M+RE G E V +P+V +R Sbjct: 442 SFRVRTDEESGQTI-IAGMGELHLDIIVDRMKREFGVEATVGKPQVAYR 489 >gi|152979791|ref|YP_001352764.1| peptide chain release factor 3 [Janthinobacterium sp. Marseille] Length = 556 Score = 88.6 bits (218), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 52/133 (39%), Positives = 72/133 (54%), Gaps = 6/133 (4%) Query: 9 RNIAIIAHVDHGKTTLVDQLLRQSGTFRDNQQVDNR------VMDSNDIEKERGITILSK 62 R II+H D GKTTL ++LL SG + V R D DIEK+RGI++ S Sbjct: 36 RTFGIISHPDAGKTTLTEKLLLFSGAIQLAGTVKGRKSGRHATSDWMDIEKQRGISVASS 95 Query: 63 NCAVEYKGTHINIVDTPGHADFGGEVERVLSMVDSVLLLVDAQEGPMPQTRFVTRKALAL 122 EY+ +N++DTPGH DF + RVL+ VDS L+++DA +G QT + Sbjct: 96 VMQFEYRDHVVNLLDTPGHQDFSEDTYRVLTAVDSALMVIDAAKGVEEQTIKLLNVCRMR 155 Query: 123 GLKPIVVLNKIDR 135 I +NK+DR Sbjct: 156 NTPIITFMNKLDR 168 >gi|152981083|ref|YP_001355117.1| elongation factor Tu [Janthinobacterium sp. Marseille] Length = 396 Score = 82.8 bits (203), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 84/278 (30%), Positives = 122/278 (43%), Gaps = 23/278 (8%) Query: 10 NIAIIAHVDHGKTTLVDQLL-----RQSGTFRDNQQVDNRVMDSNDIEKERGITILSKNC 64 N+ I HVDHGKTTL + + G + Q+DN EK RGITI + + Sbjct: 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKGYDQIDNAPE-----EKARGITINTSHV 68 Query: 65 AVEYKGTHINIVDTPGHADFGGEVERVLSMVDSVLLLVDAQEGPMPQTRFVTRKALALGL 124 E + H VD PGHAD+ + + +D +L+ A +GPMPQTR + +G+ Sbjct: 69 EYETESRHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAADGPMPQTREHILLSRQVGV 128 Query: 125 KPIVV-LNKIDRPGARAEWAINATFELFDKLGATE-EQLDFPVIYASGLNGYASLDPETR 182 I+V LNK D AE E+ + L E D P++ S Sbjct: 129 PYIIVFLNKADMV-DDAELLELVEMEVRELLSKYEFPGDDLPIVKGSAKLALEGDTGPLG 187 Query: 183 EGNMEPLFDAILKYVPARKDDPDAPLQLQITSLEYSSYVGKIGVGRILAGRIKGGQDVVW 242 E + L +A+ Y+P + D L + + S G + GRI G IK G+++ Sbjct: 188 EQAILALANALDTYIPTPERAVDGAFLLPVEDVFSISGRGTVVTGRIERGIIKVGEEIEI 247 Query: 243 MNGPEDKPTKARINQVLTFKGLE--RVLVDEALAGDIV 278 + R Q T G+E R L+D+ AGD V Sbjct: 248 VG--------IRDTQKTTCTGVEMFRKLLDQGQAGDNV 277 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.317 0.137 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,399,719 Number of extensions: 62447 Number of successful extensions: 193 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 180 Number of HSP's successfully gapped: 8 Length of query: 613 Length of database: 1,221,021 Length adjustment: 89 Effective length of query: 524 Effective length of database: 891,988 Effective search space: 467401712 Effective search space used: 467401712 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)