BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3520.p
         (331 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981461|ref|YP_001354518.1| transcriptional regulator [Jant...    91   8e-20

>gi|152981461|ref|YP_001354518.1| transcriptional regulator
           [Janthinobacterium sp. Marseille]
          Length = 841

 Score = 91.3 bits (225), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 118/257 (45%), Gaps = 24/257 (9%)

Query: 81  DAREESQDCYFAVLLLAGSEFLEQDGRQARLLPGDLAIYDAARPHRLIFPEDFRKLILQI 140
           DA  +  D    + LL G   L      AR+  GD+ + +  +  RL     F  +++++
Sbjct: 88  DAVGKRNDVVLILALLEGQGQLSVGPESARMNAGDIFLVNPQQDWRLELQTAFTAILIEL 147

Query: 141 PRHDMERRIGRMRHVTARVVDARAGAGALAANFVRAVAA-----SPQEPIPGQHSVLAQQ 195
                  R+ R        V    GAG ++A+F+ ++       SP++        L Q 
Sbjct: 148 KEAGFLARLMRTGASDLNRVVTNHGAGGISADFLYSIGEHFDGLSPED--------LGQM 199

Query: 196 IVDLLVLAIGG---------ASAPQL-CAAGNRAQSLARVKAFIDAHLCDPGLDSALVAA 245
              L  L I G         AS P    +   +   L RV   I+  L DP +  + +A 
Sbjct: 200 EASLTSLLIAGMARNGDAEEASDPDAEHSTSVQLGHLRRVCRSIENRLTDPEVSISEIAR 259

Query: 246 SAGLSSRYVNQLFEDEDTSLMRYVLRRRLEHCHDELLHAG-RNGRMYDIALRWGFNDPSH 304
              LS+RY+ +LF   DT+   YV +RRL+ C ++L ++  ++  + ++  RWGFND ++
Sbjct: 260 IENLSARYIQKLFAGGDTTFGEYVKKRRLDRCRNDLANSALKHLTICELCFRWGFNDAAN 319

Query: 305 FSRAFRKQFGGSPRNLR 321
           FSRAF  +FG SP+  R
Sbjct: 320 FSRAFNLEFGISPKAYR 336


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.324    0.137    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 662,511
Number of extensions: 23217
Number of successful extensions: 100
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 247
Effective length of database: 910,473
Effective search space: 224886831
Effective search space used: 224886831
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 130 (54.7 bits)