BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3516.p (303 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982397|ref|YP_001353609.1| LysR family transcriptional reg... 114 7e-27 gi|152982904|ref|YP_001352613.1| LysR family transcriptional reg... 77 2e-15 gi|152980333|ref|YP_001353265.1| LysR family transcriptional reg... 76 2e-15 gi|152983120|ref|YP_001354504.1| LysR family transcriptional reg... 75 7e-15 gi|152979810|ref|YP_001352746.1| LysR family transcriptional reg... 74 8e-15 >gi|152982397|ref|YP_001353609.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 284 Score = 114 bits (285), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 75/285 (26%), Positives = 126/285 (44%), Gaps = 5/285 (1%) Query: 7 NWNDLRIFLEVARAGTLSGAATKLKVDHSTISRHIAQLEAVINAPVFERDHQGFHITSKG 66 W+DLR+FL +AR GTL AA KL T+ R + LE + +F+R GF +T +G Sbjct: 3 EWSDLRVFLAIAREGTLGAAARKLGQTQPTMGRRLRALEEAVGHKLFQRGSSGFILTDEG 62 Query: 67 RELLAHVEAMESGALAITESLSGTSRVPSGSVRIATMEGIASLYLSRKFVTFKQLHPLIQ 126 +L H E M A A L+G + G +RI + + + L+ F ++HP + Sbjct: 63 AAVLIHAERMADEAEAFQRQLAGQDQQLEGLLRITSSDWFGTHVLAPVLADFTRMHPRVT 122 Query: 127 IELVTSTQLVHVNQREADIFISFFPIDGKGLEVEAIGAFPLHLYASDSYLQRFGIPHTIA 186 IEL+T ++ + +READ+ P D + + P LYA+ + P Sbjct: 123 IELLTDARVFSLARREADLAFRIQPFDEADVAARKLLHMPYGLYAAKGMAR----PQA-G 177 Query: 187 DLSAHHFVSYVDDLIQLQTVRWLEEAIKNPVVTFHSSSMIAQMFAATEGGGIVMLPAFSD 246 D + V+ WL+ + + + S++ Q G G+ +LP Sbjct: 178 DGAGSMLVTMDTAFDGAPDAVWLKRLLPHAQIALRSNNRDVQAQMCAHGAGLAVLPRLLG 237 Query: 247 AERFGLRPILMDAIDVKRTVWMTVHRDRCYMPRIKAVQRFLKETL 291 + GL + + R W+ H+D + R++++ L E L Sbjct: 238 DKFPGLDLVDLGEAPPGRDTWLGYHKDLRQLARLRSLLDLLIERL 282 >gi|152982904|ref|YP_001352613.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 314 Score = 76.6 bits (187), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 63/266 (23%), Positives = 117/266 (43%), Gaps = 4/266 (1%) Query: 5 TPNWNDLRIFLEVARAGTLSGAATKLKVDHSTISRHIAQLEAVINAPVFERDHQGFHITS 64 T + + + +EV AG+ SGAA +L + +T+SR I +LE ++ V +R + +T Sbjct: 2 TDRFESMALLVEVVDAGSFSGAARRLGIPLATVSRKIGELETMLKTRVLQRSTRQLSMTE 61 Query: 65 KGRELLAHVEAMESGALAITESLSGTSRVPSGSVRIATMEGIASLYLSRKFVTFKQLHPL 124 G+ +A + ++SG P G + I T ++ F + +P Sbjct: 62 AGQAYVAACRRILEEVDEAERAVSGEYAAPKGDLVITTPIVFGRKHVMPVVAQFLKAYPD 121 Query: 125 IQIELVTSTQLVHVNQREADIFISFFPIDGKGLEVEAIGAFPLHLYASDSYLQRFGIPHT 184 I + +V + +VH+ + DI + + + IG + AS +YL++ G P Sbjct: 122 INVRVVLADHVVHLLEEHVDIAVRVGELPDSNMVAARIGTINRVMCASPAYLKKNGTPKK 181 Query: 185 IADLSAHHFVSYVDDLIQLQTVRWLEEAIKNPVVTFHS---SSMIAQMFAATEGGGIVML 241 DLS H +++ D L+ + + E + V F ++ A + AA GI + Sbjct: 182 PDDLSKHQCITF-DGLMAPKLWQLCENGREINVPVFSRVVVNTAEAAIEAAESDIGITSV 240 Query: 242 PAFSDAERFGLRPILMDAIDVKRTVW 267 + AER + + M + +R W Sbjct: 241 LCYQIAERVRDKQLKMVLREYEREAW 266 >gi|152980333|ref|YP_001353265.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 293 Score = 76.3 bits (186), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 77/295 (26%), Positives = 125/295 (42%), Gaps = 15/295 (5%) Query: 7 NWNDLRIFLEVARAGTLSGAATKLKVDHSTISRHIAQLEAVINAPVFERDHQGFHITSKG 66 N +DL+ F+ V +GTL AA L S +SR +A+LE + + R + +T +G Sbjct: 4 NSDDLKTFVAVIDSGTLGAAAQHLGQTTSAVSRALARLEEKLATTLLTRTTRRMELTDEG 63 Query: 67 RELLAHVEAMESGALAITESLSGTSRVPSGSVRIATMEGIASLYLSRKFVTFKQLHPLIQ 126 R LL A+ + ES+ + PSG +RI + F++L+P I Sbjct: 64 RLLLTKARAILAALDEAEESIRVRRQRPSGRLRIDAASPFILHVIVPHVAEFRELYPDIT 123 Query: 127 IELVTSTQLVHVNQREADIFISFFPIDGKGLEVEAIGAFPLHLYASDSYLQRFGIPHTIA 186 +EL ++ Q+ + + DI I + L + + + + AS YL+R GIP A Sbjct: 124 LELTSNDQIADLLEHRTDIAIRVGELTDSTLHARPLRSGAMAILASPDYLRRHGIPKKPA 183 Query: 187 DLSAHH---FVSYVDDL---IQLQTVRWLEEAIKNPVVTFHSSSMIAQMFAATEGGGIVM 240 DL+ H F+ Y + ++ WL P + S + + A G GI Sbjct: 184 DLAQHETLGFLQYENGNSWPLRHDGGEWLA---TTPAIYASSGETLRAL--ALAGQGIAC 238 Query: 241 LPAF---SDAERFGLRPILMD-AIDVKRTVWMTVHRDRCYMPRIKAVQRFLKETL 291 L F D L PIL +R + +R+ RI FL++ + Sbjct: 239 LSEFMTKQDIAAGTLVPILAKYYTGYQRPIHAVYYRNTQLSRRISCFLEFLQKKM 293 >gi|152983120|ref|YP_001354504.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 303 Score = 74.7 bits (182), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 73/300 (24%), Positives = 124/300 (41%), Gaps = 14/300 (4%) Query: 7 NWNDLRIFLEVARAGTLSGAATKLKVDHSTISRHIAQLEAVINAPVFERDHQGFHITSKG 66 + ND F+ V G + A L+V ST+S + QLE+ + + R + F +T G Sbjct: 3 DLNDFYFFVHVVDRGGFTAAGRTLQVPKSTLSHRMQQLESNLGVRLLNRTSRRFGMTDAG 62 Query: 67 RELLAHVEAMESGALAITESLSGTSRVPSGSVRIATMEGIASLYLSRKFVTFKQLHPLIQ 126 E H AM A ++ P+G+VR L+ F +++P + Sbjct: 63 EEFYRHAVAMLREAELAETTVRNRLGEPTGTVRCTAGVATMQFALAEIITDFLKIYPKVN 122 Query: 127 IELVTSTQLVHVNQREADIFISFF--PIDGKGLEVEAIGAFPLHLYASDSYLQRFGIPHT 184 + ++ + + + DI I P+ L + + P L+A Y+ G P Sbjct: 123 VVAHSADRPIDIVGENYDIAIRAHTDPLPDSNLVQKTLAPTPWFLFAGADYIDANGAPKK 182 Query: 185 IADLSAHHFV----SYVDDLIQLQTVRWLEEAIKNPVVT-FHSSSMIAQMFAATEGGGIV 239 DL H + + V + +L+ V ++ I P+ S M+ AA G GIV Sbjct: 183 PQDLQNHPSLFMMRTNVAPVWKLRHVSQAKDEIVMPLTPRLLSDDMVGLQRAAINGLGIV 242 Query: 240 MLPAF--SDAERFG-LRPILMDAIDVKRTVWMTVHRDRCYMPRIKAVQRFLKETLHHDFP 296 LP++ +A R G LR +L D I T+ + + +P + R + L +FP Sbjct: 243 ALPSYICREAVRSGALRRVLPDWIAGDATITALIPYRKGLLPSV----RVFLDHLAAEFP 298 >gi|152979810|ref|YP_001352746.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 361 Score = 74.3 bits (181), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 52/220 (23%), Positives = 102/220 (46%), Gaps = 1/220 (0%) Query: 4 KTPNWNDLRIFLEVARAGTLSGAATKLKVDHSTISRHIAQLEAVINAPVFERDHQGFHIT 63 KT ++L F+ +AR G LS AA L + ++ +AQLE+ + + R + +T Sbjct: 58 KTDITSELEFFVLIARLGNLSAAARALDITPPAATKRLAQLESRLGVRLVNRTTRSISLT 117 Query: 64 SKGRELLAHVEAMESGALAITESLSGTSRVPSGSVRIATMEGIASLYLSRKFVTFKQLHP 123 S+G L + + + + +++S P G +R+ G ++ F + +P Sbjct: 118 SEGEIYLGYAARILAEVKEMEDAVSSGGGAPRGLLRVNATLGFGRTAIAPLVSEFVRRYP 177 Query: 124 LIQIELVTSTQLVHVNQREADIFISFFPIDGKGLEVEAIGAFPLHLYASDSYLQRFGIPH 183 ++++ S + + + + D+ I F + L + + L AS YL+R G P Sbjct: 178 QVEVQFEVSDKPIDLVENGFDLAIRFGTLPDTRLNARKLMSNRRFLCASPIYLERHGTPQ 237 Query: 184 TIADLSAHHFVSYVDDLIQLQTVRWLEEAIKNPVVTFHSS 223 T+ADLS H +++ + T R+ + +N V+ S+ Sbjct: 238 TLADLSRHRCITHRQNDEAAATWRFTRDG-RNEVIKVESA 276 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.323 0.136 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 683,742 Number of extensions: 26964 Number of successful extensions: 174 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 173 Number of HSP's successfully gapped: 15 Length of query: 303 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 220 Effective length of database: 914,170 Effective search space: 201117400 Effective search space used: 201117400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 129 (54.3 bits)