BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3506.p
         (124 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981979|ref|YP_001354499.1| transposase IstA [Janthinobacte...    70   5e-14
gi|152981978|ref|YP_001354482.1| transposase IstA [Janthinobacte...    59   1e-10

>gi|152981979|ref|YP_001354499.1| transposase IstA
           [Janthinobacterium sp. Marseille]
          Length = 499

 Score = 69.7 bits (169), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 63/108 (58%), Gaps = 1/108 (0%)

Query: 6   LLGTTRRWYIRDHLSIREIAGRLDISRNTVHRYIRS-DAIEPAYPTRRSPSSLNEFAPRL 64
           ++G   R Y RD LS+ EIA R  ++RNT+ +++R+ +A  P Y  R   + L+ F   L
Sbjct: 3   MMGKIHRMYFRDKLSLHEIAKRTGLARNTIRKWVRAPEAKPPVYQRRAIFNKLSPFHATL 62

Query: 65  PAWLSSESVKYRKQRRTLKQMFLDLKELGYEGSYDRVVAFARRSKVGH 112
              L ++S++ ++QRR+ K +   +K  GY+G Y ++ AF R  + G 
Sbjct: 63  EQALKADSLRPKQQRRSAKALLAQIKADGYDGGYSQLTAFIRAWRGGQ 110


>gi|152981978|ref|YP_001354482.1| transposase IstA
           [Janthinobacterium sp. Marseille]
          Length = 507

 Score = 58.5 bits (140), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 58/107 (54%), Gaps = 1/107 (0%)

Query: 6   LLGTTRRWYIRDHLSIREIAGRLDISRNTVHRYIRSDAI-EPAYPTRRSPSSLNEFAPRL 64
           ++G  RR + R   S REI+    +SRNT+ +++++    EP Y     P  L  F   L
Sbjct: 3   MIGRIRRLHSRGKKSEREISRMTGLSRNTIAKWLKAPLDGEPKYRRIEQPGKLTAFHEVL 62

Query: 65  PAWLSSESVKYRKQRRTLKQMFLDLKELGYEGSYDRVVAFARRSKVG 111
              L +++ + + +RRT + ++ +LK  GYEG Y RV  F R+ + G
Sbjct: 63  RQALKADAYRAKHERRTARALYSELKSAGYEGGYSRVTDFIRQWRQG 109


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.133    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 260,777
Number of extensions: 8810
Number of successful extensions: 33
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 2
Length of query: 124
Length of database: 1,221,021
Length adjustment: 73
Effective length of query: 51
Effective length of database: 951,140
Effective search space: 48508140
Effective search space used: 48508140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 124 (52.4 bits)