BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3503.p
         (322 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979956|ref|YP_001354806.1| threonine dehydratase [Janthino...   190   9e-50

>gi|152979956|ref|YP_001354806.1| threonine dehydratase
           [Janthinobacterium sp. Marseille]
          Length = 507

 Score =  190 bits (483), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 104/299 (34%), Positives = 168/299 (56%), Gaps = 7/299 (2%)

Query: 26  TPLLRAEKIEKAVGCQLYLKPEVLQITGAFKIRGALNKALSLSRDEIANGLIATSSGNHA 85
           +PL  A  + + VG Q+Y K E +Q   +FK+RGA NK   L   ++  G+I  S+GNHA
Sbjct: 21  SPLELAPTLSQRVGNQIYFKREDIQSVFSFKLRGAYNKMAHLPPAQMKRGVICASAGNHA 80

Query: 86  QGIAYAAKMLGVKATIVVPVTTPKIKIENTQALGAEVILFDGDTAARWEKVCDIAEENKY 145
           QG+A +A  LG +A IV+P TTP +K+E   A G EV+LF    +  ++    + ++ K 
Sbjct: 81  QGVALSATKLGCRAVIVMPTTTPSVKVEAVNARGGEVVLFGDSYSDAYQHALTLEKKLKL 140

Query: 146 MAVHGFEDPMVMAGQGTIGCEIL-EDLEDVDTIIIPLGGGGLISGIATAIKETNPSVRVI 204
             VH F+DP V+AGQGTIG EIL +    +  I +P+GGGGLI+G+A  +K   P ++VI
Sbjct: 141 TFVHPFDDPDVIAGQGTIGMEILRQHAGPIHAIFVPIGGGGLIAGVAAYVKAVRPEIKVI 200

Query: 205 GAEPALTPKYYQSRINQERISLPLKNTIADGVRISVPGQNPFPIIEKYVDEIVLVEDEHI 264
           G + + +    +S     R+++      ADG  + + G+  F + ++YVDEI++V+   +
Sbjct: 201 GVQTSDSDAMARSLQAGRRVTMADVGLFADGTAVKLVGEETFRLAKQYVDEIIVVDTNEV 260

Query: 265 IAGMRALAKDAKLIAEPAASIGLGALLA------GSVKVRPDEKVCLVLSGGNWNLSDL 317
              ++ + +D + I EP+ ++ +    A       S K   +E +  + SG N N   L
Sbjct: 261 CTAIKDVFQDTRSILEPSGALAVAGAKAYIERARASKKPLKNETLVTIASGANMNFDRL 319


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.136    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 675,094
Number of extensions: 24660
Number of successful extensions: 96
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 239
Effective length of database: 914,170
Effective search space: 218486630
Effective search space used: 218486630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)