BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3501.p (540 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982591|ref|YP_001355212.1| ABC-type transport system, peri... 102 5e-23 gi|152982644|ref|YP_001353091.1| ABC-type transport system, peri... 80 3e-16 >gi|152982591|ref|YP_001355212.1| ABC-type transport system, periplasmic component [Janthinobacterium sp. Marseille] Length = 522 Score = 102 bits (255), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 128/474 (27%), Positives = 195/474 (41%), Gaps = 64/474 (13%) Query: 57 AMAQTPKRGGKLRIATQTSSTSDTLDPAKAAHATDYARVNLFYNGLTKLDS--KLAPQMV 114 A+A P L+IA S+ +LDP A + A + ++ L +D+ KL P Sbjct: 17 ALAMQPLWAADLKIAL--SADVSSLDPHYLNIAPNVAFSSHIFDALVNVDANGKLVPG-- 72 Query: 115 LAEELLTSDAITWTVKLRRDVLFHDGKPFTPADVVYSLMR------HKDPAVASKVKVVA 168 LA DA TW KLR DV FHDG FT DVV+SL R P A +++A Sbjct: 73 LATSWRAVDATTWEFKLRHDVKFHDGSKFTAEDVVFSLDRPAKLTNSPGPYTAYTKQIIA 132 Query: 169 DQIESVKATGPNEVQIKLSGANADFPVILSTAQFLII------RDGTTEFRTPN---GTG 219 +I + ++LS A P+ L + I+ + T +F + GTG Sbjct: 133 KKIV-------DPYTVRLSTATPYGPLALDVSAIFIVSKKAAEKASTEDFNSGKALIGTG 185 Query: 220 AFKCKEFTPGVRTIAVRNENYWKSGMPYLDEVEVFGIPDEAARVNALLSGDVQWINDVNA 279 +K F G R RNE YW G D+V I + A R+ ALLSGDV I V Sbjct: 186 PYKFVSFKRGDRIEVARNEQYW-GGKSDWDKVSFRIITNSAPRLAALLSGDVDAIEGVPT 244 Query: 280 RSTERVRTTAGYTVMETKTGLYTDLVIRQ---------DVA-------PGNSMDFTLGMK 323 +++ A + + + + I Q D A P + + Sbjct: 245 ADLSKLKGNAKFKLEQKISWRTIFWEIDQSERSSRYVTDKAGKPLPKNPLRDIRVRQAIS 304 Query: 324 YLIDREQIKTAAFRGYAVVANDQPIDPTNRFYFPGLPQRQYDPDKAKFYLQKAGVLGSTI 383 I+R+ + G AV A++ + P Y L YDP+ AK L +AG + Sbjct: 305 KAINRQALVDRTMEGLAVPASNI-VAPGLLGYNDALKVEAYDPEGAKKLLAEAGYPNGFV 363 Query: 384 PLVASVAATGSVDIAVLMQQSAQ---KIGLKLDVKRVPADGYWSN----QWMKVPLGFGN 436 L ++ A ++Q AQ +IG++ V+ +P Y+S ++ LG+G Sbjct: 364 -LTLHGPNDRYINDAQVVQTVAQFLNRIGIQTKVETLPLSVYFSKARAGEFSVALLGWGT 422 Query: 437 INPRPSADILFTQLFKSD------AQWNESGWKNAQFDQLLVAARGETDFNKRK 484 + + D L + WN + N D+L+ A+ G D KR+ Sbjct: 423 L----AGDFGLRTLVGTSNPDIGWGTWNWGKYSNPALDKLIAASLGSVDQAKRE 472 >gi|152982644|ref|YP_001353091.1| ABC-type transport system, periplasmic component [Janthinobacterium sp. Marseille] Length = 535 Score = 80.5 bits (197), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 118/453 (26%), Positives = 187/453 (41%), Gaps = 52/453 (11%) Query: 108 KLAPQMVLAEELLTSDAITWTVKLRRDVLFHDGKPFTPADVVYSL---MRHKDPAVASK- 163 KL P + ++ D W LR+ V FHDG F VV++L + K P +K Sbjct: 77 KLIPGLATEWKVDPKDQKKWLFTLRKGVKFHDGSDFKADAVVWNLDKVLNDKSPQFDAKQ 136 Query: 164 ---VKVVADQIESVKATGPNEVQIKLSGANADFP------VILSTAQFLII-RDGTTEFR 213 V+ I S + V+I +A FP +I S AQ+ + RD Sbjct: 137 SAQVRPRIPSIVSYRKVNDYAVEITTKEIDALFPYQLPWFLISSPAQWEKVGRDWNKFAS 196 Query: 214 TPNGTGAFKCKEFTPGVRTIAVRNENYW-KSGMPYLDEVEVFGIPDEAARVNALLSGDVQ 272 +GTG FK + P R V+N YW KS + D V + IPD R NALL+G V Sbjct: 197 QASGTGPFKLDKLVPRERAELVKNAGYWDKSRLAQTDRVILLPIPDALTRANALLNGQVD 256 Query: 273 WINDVNARSTERVRTTAGYTVMETKTGLYTDLVIRQDVAPGNSMDFTLGMKYLIDREQIK 332 I +++++ V ++ Q +P + +DR I Sbjct: 257 IIETPPPDVLPQLKSSGFKLVTNVTPHVWPYHFSTQPGSPWTDIRVRKAANLAVDRSGI- 315 Query: 333 TAAFRGYAVVANDQPIDPTNRFYFPGLPQRQYDPDKAKFYLQKAGVLGSTIPLVASV--- 389 A G AV A Q +DPT+ ++ + +YD A+ + +AG S PL A + Sbjct: 316 VALMNGLAVPAYGQ-LDPTSPWFGKPTFKIKYDLAAARALMAQAGYSPSK-PLKAKIVIA 373 Query: 390 -AATG---SVDIAVLMQQSAQKIGLKLDVKRVPADG---YWSNQWMKVPLGFGNINPRP- 441 TG S+ + +QQS +IG+++ + V + +W + G+IN Sbjct: 374 QGGTGQMLSLPMNEYIQQSLAEIGIQVQFEVVELETLYLHWRSG------AKGDINAGKG 427 Query: 442 ---------SADILFTQLFKSDAQW------NESGWKNAQFDQLLVAARGETDFNKRKQM 486 +AD + +D+++ N GW N + D L R D + ++ Sbjct: 428 ITAINLGYVTADPFYALTRFADSRYVAPNGVNWGGWSNPKVDAELDQIRTTFDVKAQDKL 487 Query: 487 YADM-QTLVHEKCGIGIPVFIVNLEGVSTKVKG 518 A + Q +V + + + V VN +S KVKG Sbjct: 488 LAQVHQAMVDDALMLWV-VHDVNPHVISPKVKG 519 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.133 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,262,893 Number of extensions: 52469 Number of successful extensions: 131 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 125 Number of HSP's successfully gapped: 2 Length of query: 540 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 452 Effective length of database: 895,685 Effective search space: 404849620 Effective search space used: 404849620 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)