BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3497.p (597 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981383|ref|YP_001351716.1| methyl-accepting chemotaxis pro... 244 1e-65 gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis pro... 243 2e-65 gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis pro... 243 3e-65 gi|152981384|ref|YP_001354274.1| methyl-accepting chemotaxis pro... 241 9e-65 gi|152982139|ref|YP_001353025.1| methyl-accepting chemotaxis I (... 238 1e-63 >gi|152981383|ref|YP_001351716.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 662 Score = 244 bits (622), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 153/321 (47%), Positives = 223/321 (69%), Gaps = 2/321 (0%) Query: 276 SLILIVGIASVIGVAVTATAFRRLGQVSQAMAAIGSGSGDLTQRLPDQGKDEVAVISRSF 335 +LI + +A+++ A+ + R L Q + + +G DLT R+ ++ DEV + S Sbjct: 180 ALIATLVLAALLYSAIRSMLLRPLAQATHTARKLATG--DLTIRMENKRTDEVGQLLASI 237 Query: 336 NQFVGQLQNVMLDIRDASEAVRMASNEIATANQDLSTRTESAAASLEQTAASMAEISETV 395 N L NV+ +IR+ ++ + A+NEIA N DLS+RTE A+SLE+TA++M E++ TV Sbjct: 238 NSIGQGLANVVWNIRNGTKTLSTATNEIAAGNLDLSSRTEQQASSLEETASAMEEMTSTV 297 Query: 396 SRSTAAAKQADQRSSSATEIASQGGKVVSDAVTTIGEIEKVSSQIGAIITVIDGIAFQTN 455 + A A+QA+Q + +A+E+A +GG VV++ V T+ I + S +I II+VIDGIAFQTN Sbjct: 298 KENAANAEQANQLARTASEVAVKGGNVVAEVVNTMDSINQSSKKIVDIISVIDGIAFQTN 357 Query: 456 ILALNAAVEAARAGEQGRGFAVVAHEVRSLAKRSAEAAREVKELVETTVSRVSAGSVQVR 515 ILALNAAVEAARAGEQGRGFAVVA EVRSLA+RS+ AARE+K L+E +V++V +GS V Sbjct: 358 ILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSSAAAREIKSLIEDSVNKVQSGSKLVA 417 Query: 516 QAGTTMGEIVTQSADVQSLISGIARATDEQMRGIQEVNRAVIQLDSMVQQNAALVEQSAA 575 AG TM E+V V ++++ I+ A+ EQ GI++VN+A+ Q+D + QQNAALVEQ+AA Sbjct: 418 HAGDTMNEVVASIKRVDNIMTEISSASREQSIGIEQVNQAIAQMDQVTQQNAALVEQAAA 477 Query: 576 ASATLQAQANTLASTIGRFRI 596 A+ +LQ+Q L + + F I Sbjct: 478 AAESLQSQTTELNNVVDVFTI 498 >gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 571 Score = 243 bits (621), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 156/324 (48%), Positives = 222/324 (68%), Gaps = 6/324 (1%) Query: 279 LIVGIASVIGVAVTAT----AFRRLGQ-VSQAMA-AIGSGSGDLTQRLPDQGKDEVAVIS 332 L++GI S+I V + A A R + + +SQA+ A GDLT + + KDE + Sbjct: 188 LLIGIFSIIAVLIAAVFAVLATRSITRPLSQAVVLARKVADGDLTGSIVVESKDETGQLL 247 Query: 333 RSFNQFVGQLQNVMLDIRDASEAVRMASNEIATANQDLSTRTESAAASLEQTAASMAEIS 392 ++ L ++ +R ++ + AS++IAT N DLS+RTE A+SLE+TA+SM E++ Sbjct: 248 QALKDMNEGLLKIVTQVRLGTDTIASASHQIATGNLDLSSRTEQQASSLEETASSMEELT 307 Query: 393 ETVSRSTAAAKQADQRSSSATEIASQGGKVVSDAVTTIGEIEKVSSQIGAIITVIDGIAF 452 TV ++ A+Q++Q + SA+E+A +GG VVS V T+GEI + +I II VIDGIAF Sbjct: 308 STVKQNAENARQSNQLALSASEVAVRGGAVVSKVVDTMGEINDSAKKIVDIIGVIDGIAF 367 Query: 453 QTNILALNAAVEAARAGEQGRGFAVVAHEVRSLAKRSAEAAREVKELVETTVSRVSAGSV 512 QTNILALNAAVEAARAGEQGRGFAVVA EVR+LA+RSA AA+E+KEL+ +V +VS GS Sbjct: 368 QTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKELIGDSVDKVSIGSR 427 Query: 513 QVRQAGTTMGEIVTQSADVQSLISGIARATDEQMRGIQEVNRAVIQLDSMVQQNAALVEQ 572 V AG TM E+V V ++S I A+ EQ GI+++N+AV+Q+D + QQNAALVE+ Sbjct: 428 LVDDAGATMREVVESVKRVTDIMSEITAASQEQTDGIEQINQAVMQMDQVTQQNAALVEE 487 Query: 573 SAAASATLQAQANTLASTIGRFRI 596 +AAA+ +LQ QA+ L+ +G F++ Sbjct: 488 AAAAAESLQGQASHLSQVVGVFKL 511 >gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 243 bits (619), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 141/283 (49%), Positives = 196/283 (69%) Query: 314 GDLTQRLPDQGKDEVAVISRSFNQFVGQLQNVMLDIRDASEAVRMASNEIATANQDLSTR 373 GDLT + + KDE + + LQ ++ ++R +E + ASNEIA N DLS+R Sbjct: 232 GDLTNDIKAESKDECGQLLAALKDMNDGLQRIVGEVRLGTETITTASNEIAAGNLDLSSR 291 Query: 374 TESAAASLEQTAASMAEISETVSRSTAAAKQADQRSSSATEIASQGGKVVSDAVTTIGEI 433 TE A+SLE+TA+SM E++ TV ++ A+QA+Q + SA+E+A +GG VVS V T+ I Sbjct: 292 TEQQASSLEETASSMEELTSTVKQNADNARQANQLAVSASEVALKGGDVVSQVVQTMSSI 351 Query: 434 EKVSSQIGAIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAHEVRSLAKRSAEAA 493 + S +I II+VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLA+RSA AA Sbjct: 352 NESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSASAA 411 Query: 494 REVKELVETTVSRVSAGSVQVRQAGTTMGEIVTQSADVQSLISGIARATDEQMRGIQEVN 553 +E+K L+ +V +V G+ V +AG TM EIV V ++ I A+ EQ GI+++N Sbjct: 412 KEIKALIGDSVGKVDTGNKLVAEAGATMDEIVNSIRRVTDIMGEITAASQEQSAGIEQIN 471 Query: 554 RAVIQLDSMVQQNAALVEQSAAASATLQAQANTLASTIGRFRI 596 +A+ Q+D + QQNA+LVE++AAA+ ++Q QA L +G F++ Sbjct: 472 QAIGQMDHVTQQNASLVEEAAAAAESMQDQARKLGQVVGAFKL 514 >gi|152981384|ref|YP_001354274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 568 Score = 241 bits (615), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 159/330 (48%), Positives = 232/330 (70%), Gaps = 13/330 (3%) Query: 275 LSLILIVG-IASVIGVA----VTATAFRRLGQ---VSQAMAAIGSGSGDLTQRLPDQGKD 326 + +++++G +A+V G+A +T + + L + ++Q +AA GDLT + + KD Sbjct: 189 IQMMMVLGALAAVGGIALAYWITHSITKPLHEAVKIAQTVAA-----GDLTSVIEAKYKD 243 Query: 327 EVAVISRSFNQFVGQLQNVMLDIRDASEAVRMASNEIATANQDLSTRTESAAASLEQTAA 386 E + R+ G L ++ ++R ++EA+ +AS +IA+ N DLS+RTE A+SLE+TA+ Sbjct: 244 ETGQLLRALKDMNGSLIRIVGEVRHSTEAIAIASTQIASGNMDLSSRTEEQASSLEETAS 303 Query: 387 SMAEISETVSRSTAAAKQADQRSSSATEIASQGGKVVSDAVTTIGEIEKVSSQIGAIITV 446 SM E++ TV ++ A+QA+Q + +A+ +AS+GG VVS V T+G I + +I II V Sbjct: 304 SMEELTGTVRQNADNARQANQLALTASSVASKGGDVVSQVVDTMGSINDSAKKIADIIGV 363 Query: 447 IDGIAFQTNILALNAAVEAARAGEQGRGFAVVAHEVRSLAKRSAEAAREVKELVETTVSR 506 IDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLA+RSA AA+E+K L+ +V + Sbjct: 364 IDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKEIKTLIGDSVQK 423 Query: 507 VSAGSVQVRQAGTTMGEIVTQSADVQSLISGIARATDEQMRGIQEVNRAVIQLDSMVQQN 566 V+AGS V AG+TM E+V V ++ I A+ EQ GI+++N+AVIQ+DS+ QQN Sbjct: 424 VNAGSRLVDDAGSTMQEVVASVRRVTDIMGEITAASQEQTTGIEQINQAVIQMDSVTQQN 483 Query: 567 AALVEQSAAASATLQAQANTLASTIGRFRI 596 AALVEQ+AAA+A+LQ QA +LA +G F++ Sbjct: 484 AALVEQAAAAAASLQHQAGSLAQVVGVFKL 513 >gi|152982139|ref|YP_001353025.1| methyl-accepting chemotaxis I (serine chemoreceptor protein) transmembrane protein [Janthinobacterium sp. Marseille] Length = 560 Score = 238 bits (606), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 154/325 (47%), Positives = 221/325 (68%), Gaps = 12/325 (3%) Query: 275 LSLILIVGIASVIGVAVTATAFRRLGQ---VSQAMAAIGSGSGDLTQRLPDQGKDEVAVI 331 ++L+L +G+ VI ++T R L + V+Q +A SGDLT ++ + KDE + Sbjct: 194 VALLLSIGLGIVISRSIT----RPLNEAVLVAQTVA-----SGDLTSQINVKSKDETGQL 244 Query: 332 SRSFNQFVGQLQNVMLDIRDASEAVRMASNEIATANQDLSTRTESAAASLEQTAASMAEI 391 ++ L ++ ++R + + ASN+IA+ N DLS+RTE A+SLE+TA+SM E+ Sbjct: 245 LQALKDMNQSLIGIVDEVRSGTATMATASNQIASGNMDLSSRTEEQASSLEETASSMEEL 304 Query: 392 SETVSRSTAAAKQADQRSSSATEIASQGGKVVSDAVTTIGEIEKVSSQIGAIITVIDGIA 451 + TV ++ A+QA+ S SA+EIA +GG+VVS+ V T+ I + +I II VIDGIA Sbjct: 305 TSTVKQNADNARQANSLSLSASEIAVKGGQVVSEVVVTMNGINDSAKKITDIIGVIDGIA 364 Query: 452 FQTNILALNAAVEAARAGEQGRGFAVVAHEVRSLAKRSAEAAREVKELVETTVSRVSAGS 511 FQTNILALNAAVEAARAGEQGRGFAVVA EVR+LA+RSA AA+E+K L++ +V RV GS Sbjct: 365 FQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKALIDDSVGRVDTGS 424 Query: 512 VQVRQAGTTMGEIVTQSADVQSLISGIARATDEQMRGIQEVNRAVIQLDSMVQQNAALVE 571 V QAG+TM E+V V +++ I A+ EQ GI++VN+A+ Q+D + QQNAALVE Sbjct: 425 KLVVQAGSTMTEVVDSVKRVTDIMAEIMAASQEQSAGIEQVNQAIAQMDHVTQQNAALVE 484 Query: 572 QSAAASATLQAQANTLASTIGRFRI 596 ++AAA+ +L+ QA L T+ F+I Sbjct: 485 EAAAAAGSLKDQAVKLEQTVSVFKI 509 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.315 0.126 0.335 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,015,066 Number of extensions: 36557 Number of successful extensions: 282 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 224 Number of HSP's successfully gapped: 21 Length of query: 597 Length of database: 1,221,021 Length adjustment: 89 Effective length of query: 508 Effective length of database: 891,988 Effective search space: 453129904 Effective search space used: 453129904 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)