BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3495.p
         (212 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152983069|ref|YP_001352708.1| TetR family transcriptional reg...   108   2e-25

>gi|152983069|ref|YP_001352708.1| TetR family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 191

 Score =  108 bits (271), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 66/187 (35%), Positives = 98/187 (52%), Gaps = 5/187 (2%)

Query: 23  ETQELLLHAGLEVLTEKGFSATGIDEILSRVNVPKGSFYHYFASKEAYGLELIALYGAYF 82
           E ++ LL  G EV+   GF A G+ EI +   +PKGSFY YFASK+A+ +E++  Y    
Sbjct: 8   EVRDRLLSHGREVVHMNGFHACGVQEITNAAGIPKGSFYSYFASKDAFAVEILEAYWTEI 67

Query: 83  ARKLDKHFTNEDVPPLERLEHFIEDAKLGMSRFDFRRGCLIGNLGQEMGSLPESFRIRLV 142
                   T+ D P      HF   +    S   F RGCLIGNL  E+G    + R +L 
Sbjct: 68  ETLQSAARTSRD-PATTLRSHFRALSNFHESN-GFVRGCLIGNLSLELGGTSGAVRSQLQ 125

Query: 143 EVFQDWERRLSQCLKLAQKARQIPQTVHCDQMASAFWIGWEGAVLRAKLESSAKPMDVFS 202
           ++F+ W+  + + + LA   R    +  C ++A+A    +EGAV+RAK++    P D F 
Sbjct: 126 DIFRRWQETIEEHVALALPLR---SSNECRKIAAAMLDAYEGAVMRAKVDQDRAPFDRFE 182

Query: 203 QHFLASL 209
              LA+L
Sbjct: 183 NLVLAAL 189


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 468,831
Number of extensions: 17652
Number of successful extensions: 61
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 1
Length of query: 212
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 133
Effective length of database: 928,958
Effective search space: 123551414
Effective search space used: 123551414
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)