BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3494.p
         (343 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152983145|ref|YP_001352184.1| phage integrase family site spe...   142   3e-35
gi|152983286|ref|YP_001354223.1| phage integrase/recombinase [Ja...    59   4e-10

>gi|152983145|ref|YP_001352184.1| phage integrase family site
           specific recombinase [Janthinobacterium sp. Marseille]
          Length = 328

 Score =  142 bits (358), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 104/331 (31%), Positives = 164/331 (49%), Gaps = 22/331 (6%)

Query: 10  RWRARIRRKGFPAQSEMFDTKAQAQDWASRQEADMRALKFQDVRIIADKTLGSAIDRYVE 69
           +++AR+R KG P  S+ F TKA A  WA  QE  ++  +   + +  + T+ +A+DRY  
Sbjct: 11  QFQARVRIKGNPELSKTFSTKAAAVHWADEQERLVKQGRGSAILLANNLTITAALDRYAR 70

Query: 70  EQTQVKPLGKNKKAVLATLKRY----LGKLTMPELTGDALIDYVKERKGAGAGGVTIAID 125
           E   V PL K  K  L  L+R+    L +LTMP+L    L  Y  +R   G G  T+ ++
Sbjct: 71  E---VTPLKKGWKQELVRLRRWQSNPLAQLTMPQLRAAELAKYRDQRLSDGLGANTVRLE 127

Query: 126 LTYLSSVLRAARNIWRWPVNLDAIAQARAYMDHIGLSTRSKERTRRPTKIELGNISTWFV 185
           L  +S V   A   W   V ++ +   R            + R RR T+ E   +  +  
Sbjct: 128 LALISHVYEVAIKDWGLEVLINPVRIIRK-------PKLPRGRERRLTEGEEDLLLEY-- 178

Query: 186 VKARQKVPMSDLIAFAVDTAMRLSEIINLKWADLNEEDRTIIIRNRKHPRAKIGNDQEVP 245
            K +    +  +I  A++TAMR  EI +L   +++ + R I +   K+     G+ ++VP
Sbjct: 179 CKKKGAALLRLVIILALETAMRRGEIASLHTENIDLDSRLIFLDQTKN-----GDKRKVP 233

Query: 246 LLGDAFAIIKRQPKMDKEERIFPVTEGTVSSLFPRACKSLGIEDLRFHDLRHEGVSRLFE 305
           L   A   ++      K   + P+    +S  F +ACK  GI  L  HDLRHE  SRLFE
Sbjct: 234 LSRRAQKELENY-LCGKHGELVPLHPDNISGAFSQACKVCGISGLTLHDLRHEATSRLFE 292

Query: 306 QGYSIEQVALVSGHRDWKMLARYTQIRAKDL 336
           +G+++ +VA ++GH+   ML RYT +   D 
Sbjct: 293 KGFNMMEVAAITGHKTLTMLKRYTHLDTADF 323


>gi|152983286|ref|YP_001354223.1| phage integrase/recombinase
           [Janthinobacterium sp. Marseille]
          Length = 404

 Score = 58.9 bits (141), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 76/150 (50%), Gaps = 15/150 (10%)

Query: 197 LIAFAVDTAMRLSEIINLKWADL-----NEEDRTIII--RNRKHPRAKIGNDQEVPLLGD 249
           L+ F + +A R+ E   +K+ D+     N E+  I I   N+K    K   D+   +  +
Sbjct: 241 LLHFLIYSAFRIGETFLIKFKDIRLNEENPEESYIFIPKENQKIADKKGAKDRYANIRPE 300

Query: 250 AFAIIKRQ--P-KMDKEERIFPVTEGTVSSLFPR---ACKSLGIEDLRFHDLRHEGVSRL 303
            +A+IK +  P K+   + +F +  G  +  + R    CKS  I++L  HDLRHEG S  
Sbjct: 301 LYALIKEKIMPWKIKPNDIVFSMWSGP-AYFYTRLKTICKSAEIKNLTDHDLRHEGCSYF 359

Query: 304 FEQG-YSIEQVALVSGHRDWKMLARYTQIR 332
           FE    S  +++ ++GH D K L RY  +R
Sbjct: 360 FENTMLSDIEISNITGHLDLKTLRRYANLR 389


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 757,771
Number of extensions: 29434
Number of successful extensions: 85
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 2
Length of query: 343
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 259
Effective length of database: 910,473
Effective search space: 235812507
Effective search space used: 235812507
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)