BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3493.p
         (354 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980796|ref|YP_001354180.1| tRNA-dihydrouridine synthase A ...   577   e-166
gi|152981141|ref|YP_001351996.1| tRNA-dihydrouridine synthase [J...    83   3e-17

>gi|152980796|ref|YP_001354180.1| tRNA-dihydrouridine synthase A
           [Janthinobacterium sp. Marseille]
          Length = 344

 Score =  577 bits (1486), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 271/327 (82%), Positives = 296/327 (90%), Gaps = 4/327 (1%)

Query: 25  RTISVAPMMDWTDRHCRVFHRQITRHTWLYTEMVTTGALLHGDVPRHLDFDEQEHPVALQ 84
           R ISVAPMMDWTDRHCR+FHRQITRHTWLYTEMVTTGALLHGDVPRHLDF+E+EHPVALQ
Sbjct: 16  RRISVAPMMDWTDRHCRMFHRQITRHTWLYTEMVTTGALLHGDVPRHLDFNEEEHPVALQ 75

Query: 85  LGGSEPADLAHSAKLGEQWGYDEINLNCGCPSERVQKGAFGACLMGEPALVADCVKAMRD 144
           LGGSEPADLA SAKLGEQWGYDE+NLNCGCPSERVQKGAFGACLM E  LVADCVKAMRD
Sbjct: 76  LGGSEPADLAKSAKLGEQWGYDEVNLNCGCPSERVQKGAFGACLMNETGLVADCVKAMRD 135

Query: 145 AVSIDVTVKHRIGIDDVQSYDFVRDFVGQIAEAGCQTFIVHARNAILKGLSPKENREIPP 204
           AVSIDVTVKHRIGIDD+ SYDFVRDFVG IA+AGC TFIVHARNAILKGLSPKENREIPP
Sbjct: 136 AVSIDVTVKHRIGIDDITSYDFVRDFVGTIADAGCNTFIVHARNAILKGLSPKENREIPP 195

Query: 205 LKYHYAYQLKKDFPQLEILINGGIKTLPEIDEHLQHVDGVMLGREAYHNPYLMASFDARY 264
           L+Y +AYQLKKDFP LEI+INGG KT+ EID HLQHVDGVMLGREAYHNP+LM++FDARY
Sbjct: 196 LRYEFAYQLKKDFPALEIIINGGTKTVAEIDTHLQHVDGVMLGREAYHNPFLMSTFDARY 255

Query: 265 YGDLEGGRQPSRAEVIAAMLPYIKRQLELHG--DNGRGLRLNSITRHMLGLLAGMPGARA 322
           YGD       +RAEV+ AM+PYI  QL+LHG  + G GL++NSITRHMLGL+AG+P +RA
Sbjct: 256 YGD--DATSKTRAEVVQAMIPYIHAQLQLHGKSEKGGGLKVNSITRHMLGLMAGLPNSRA 313

Query: 323 FRQTLSDSKRLALGDPALLLEALQRTQ 349
           FRQTLSDSK+LALGDP LLL+AL R Q
Sbjct: 314 FRQTLSDSKKLALGDPDLLLQALARMQ 340


>gi|152981141|ref|YP_001351996.1| tRNA-dihydrouridine synthase
           [Janthinobacterium sp. Marseille]
          Length = 338

 Score = 82.8 bits (203), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 137/315 (43%), Gaps = 24/315 (7%)

Query: 20  PSLPPRTISVAPMMDWTDRHCRVFHRQITRHTWLYTEMVTTGALLHGD--VPRHLDFDEQ 77
           P   P  + VAPM   TDR  R   +Q+    +  +EM  +   L       R  + D +
Sbjct: 5   PYSLPNNVFVAPMAGVTDRPFRQLCKQLG-AGYAVSEMAASNPRLWASDKSTRRTNHDGE 63

Query: 78  EHPVALQLGGSEPADLAHSAKLGEQWGYDEINLNCGCPSERVQKGAFGACLMGEPALVAD 137
             P A+Q+ G++P  LA  AK     G   I++N GCP ++V     G+ L+   +LVA+
Sbjct: 64  VEPKAVQIAGADPVLLAECAKFNVDRGAQIIDINMGCPVKKVCNSWCGSALLQHESLVAE 123

Query: 138 CVKAMRDAVSIDVTVKHRIGIDDVQSYDFVRDFVGQIAE-AGCQTFIVHARNAILKGLSP 196
            ++A+  +V++ VT+K R G D           + +IAE +G     +H R         
Sbjct: 124 ILEAVVASVNVPVTLKFRTGWDRAHKNAL---NIARIAEQSGIAMLTLHGRTRADGYSGD 180

Query: 197 KENREIPPLKYHYAYQLKKDFPQLEILINGGIKTLPEIDEHLQHV---DGVMLGREAYHN 253
            E   I  +K   +         + ++ NG I T PE   ++  V   D +M+GR A   
Sbjct: 181 AEYETITAVKAAVS---------IPVVANGDITT-PEKARYVLDVTGADAIMIGRAAQGR 230

Query: 254 PYLMASFDARYYGDLEGGRQPSRAEVIAAMLPYIKRQLELHGDNGRGLRLNSITRHMLGL 313
           P++    +  Y         P  AEV   M  +++     +G+    L + +  +H+   
Sbjct: 231 PWIFREIE-HYLRTGTYLPAPMIAEVRTLMDEHLRAHYAFYGEY---LGVRTARKHIGWY 286

Query: 314 LAGMPGARAFRQTLS 328
           +  + G  AFRQ ++
Sbjct: 287 VRELVGGEAFRQQMN 301


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.137    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 848,027
Number of extensions: 36005
Number of successful extensions: 81
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 2
Length of query: 354
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 270
Effective length of database: 910,473
Effective search space: 245827710
Effective search space used: 245827710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)