BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3492.p
         (373 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980483|ref|YP_001354030.1| bifunctional 3,4-dihydroxy-2-bu...   588   e-169

>gi|152980483|ref|YP_001354030.1| bifunctional
           3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP
           cyclohydrolase II-like protein [Janthinobacterium sp.
           Marseille]
          Length = 370

 Score =  588 bits (1516), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 283/370 (76%), Positives = 316/370 (85%), Gaps = 3/370 (0%)

Query: 1   MPLATTEEIVAELRAGRMVILVDEEDRENEGDLVLATDFVTPEAINFMVTHARGLVCLTL 60
           M ++TT+EIVAELRAGRMVILVDEEDRENEGDLVLA +FVTPEAINFM    RGLVCLTL
Sbjct: 1   MSISTTQEIVAELRAGRMVILVDEEDRENEGDLVLAAEFVTPEAINFMAKFGRGLVCLTL 60

Query: 61  TEEHVDQLDLPLMASRNGTAYGTNFTVSIEAAEGVTTGISAADRARTIQVAASKGAKPSD 120
           TEE  DQL L +M +RNGT+YGTNFTVSIEAAEGVTTGISAADRA+TIQVA +K AKPSD
Sbjct: 61  TEERCDQLALTMMTTRNGTSYGTNFTVSIEAAEGVTTGISAADRAKTIQVAVAKNAKPSD 120

Query: 121 LVQPGHIFPLRAQKGGVLMRAGHTEAGCDLTAMAGLTPASVICEILKDDGTMARLPDLLE 180
           +VQPGHIFPL+AQKGGVLMRAGHTEAGCD   +AGLTPA+VICEI+KDDGTMARLPDL+E
Sbjct: 121 IVQPGHIFPLKAQKGGVLMRAGHTEAGCDFAELAGLTPAAVICEIMKDDGTMARLPDLIE 180

Query: 181 FAKKHKLKIGTIADLIHYRSRNESIIERVAEREMQTAHGSFKAIAYRDTPSGGAHLALVH 240
           FAK+H LKIGTIADLIHYRS++E+I++RV ER M+T +GSFK I YRD PSGGAHLALVH
Sbjct: 181 FAKEHGLKIGTIADLIHYRSQHETIVDRVGERVMETVYGSFKTIVYRDKPSGGAHLALVH 240

Query: 241 GDIQPGRETLVRVHQPVSILDLLEAGVTTHSWNLAAAMQAVQAAESGVIVLLNCEESAQQ 300
           GDI   +ETLVRVHQPVS+LD LE   TTHSWNLA+AM A++ +E GV+VLLNCEESA +
Sbjct: 241 GDISADQETLVRVHQPVSVLDWLETKATTHSWNLASAMAAIKQSERGVMVLLNCEESADE 300

Query: 301 MFDQFGALNKVGTPAAAKPARADRMDLRTYGIGAQILKDLGVCKMKLLASPRKMPSMTGF 360
            F QF ALN    P +    RA  MDLRTYGIGAQILKDL V KMKLLA+ RKMPSM GF
Sbjct: 301 FFSQFEALNN---PESRPQQRAAHMDLRTYGIGAQILKDLSVGKMKLLANQRKMPSMAGF 357

Query: 361 QLEVTGYQTR 370
            LEVTGYQ R
Sbjct: 358 DLEVTGYQAR 367


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.133    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 845,579
Number of extensions: 33797
Number of successful extensions: 102
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 288
Effective length of database: 906,776
Effective search space: 261151488
Effective search space used: 261151488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)