BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3491.p
         (161 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979909|ref|YP_001354029.1| 6,7-dimethyl-8-ribityllumazine ...   273   5e-75
gi|152980312|ref|YP_001353035.1| riboflavin synthase subunit bet...    60   6e-11

>gi|152979909|ref|YP_001354029.1| 6,7-dimethyl-8-ribityllumazine
           synthase [Janthinobacterium sp. Marseille]
          Length = 162

 Score =  273 bits (697), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 132/161 (81%), Positives = 149/161 (92%)

Query: 1   MTIGTYDPDLNGESLRIGIVQARFNEDVCHGLLAACLAELKHLGVADEDILHVTVPGALE 60
           MT+G+Y+ +L G+ LRIGIVQARFN+DVCHGLLA+CLAELKHLGV DED+LHVTVPGALE
Sbjct: 1   MTVGSYEMNLAGQGLRIGIVQARFNQDVCHGLLASCLAELKHLGVEDEDVLHVTVPGALE 60

Query: 61  IPLALQKMAETEQFDALIALGAVIRGETYHFELVSNESGAGITRIGLDFGLPIANAVLTT 120
           IPLAL+KMAET QFDALIA+GAVIRGETYHFELVSNESGAGITR+GLDFGLPIANAVLTT
Sbjct: 61  IPLALRKMAETLQFDALIAIGAVIRGETYHFELVSNESGAGITRVGLDFGLPIANAVLTT 120

Query: 121 ENDEQAEVRMAEKGADAARVAVEMANLSIVLEELGQATEEE 161
           + DEQAE RM EKGADAARVAVEMANL+I LE+L  A +++
Sbjct: 121 DTDEQAEARMEEKGADAARVAVEMANLTIALEDLADAADDQ 161


>gi|152980312|ref|YP_001353035.1| riboflavin synthase subunit beta
           [Janthinobacterium sp. Marseille]
          Length = 167

 Score = 60.1 bits (144), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 60/107 (56%)

Query: 16  RIGIVQARFNEDVCHGLLAACLAELKHLGVADEDILHVTVPGALEIPLALQKMAETEQFD 75
           RI  +QA +++++      A +AE+   G  ++ I    V GA EIPL  + +A++ ++ 
Sbjct: 15  RIAFIQASWHKEIVDQCRIAFIAEMAERGYTEDSIDFFEVAGAFEIPLHAKVLAKSGRYA 74

Query: 76  ALIALGAVIRGETYHFELVSNESGAGITRIGLDFGLPIANAVLTTEN 122
           A++  G V+ G  Y  E VS    +G+ ++ L+  +P+ +AVLT  +
Sbjct: 75  AVVGTGLVVDGGVYRHEFVSQAVISGLMQVQLETEVPVISAVLTPHH 121


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.316    0.134    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 362,812
Number of extensions: 14348
Number of successful extensions: 43
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 2
Length of query: 161
Length of database: 1,221,021
Length adjustment: 76
Effective length of query: 85
Effective length of database: 940,049
Effective search space: 79904165
Effective search space used: 79904165
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)