BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3488.p
         (335 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982375|ref|YP_001354026.1| hypothetical protein mma_2336 [...   277   7e-76

>gi|152982375|ref|YP_001354026.1| hypothetical protein mma_2336
           [Janthinobacterium sp. Marseille]
          Length = 303

 Score =  277 bits (708), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 147/257 (57%), Positives = 184/257 (71%), Gaps = 26/257 (10%)

Query: 39  HRLLTMAGIAALFVLGLMFFNPDLADRLISMSPFSDAPEEVQEADAPATPALADLMAPTT 98
           H L+ + G+ A+  L LMFF P++A+++ ++SPFSDA          ATP+  D+    +
Sbjct: 34  HALMAL-GLTAIATLALMFFKPEVAEKIQAISPFSDA--------VAATPSDEDM----S 80

Query: 99  PVASVNALAGAAVAGSVQSAVATQPQHQTQALTPEERQLLGNPRQQKLVTNWLAKRYRVA 158
           P+A++     +AV   +   V+T P             +LG   QQ+ VT W++KRYRVA
Sbjct: 81  PIANLMDDPASAVVEDM-PVVSTNPA------------MLGTDIQQQRVTQWISKRYRVA 127

Query: 159 SDAADMLVSAAYLTARDIKLDPLLILSVIAIESRFNPFAESPMGAQGLMQVMAKVHHDKF 218
           +DA +MLVSAAYLTA++I LDPLLIL+V+AIESRFNPFAESP+GAQGLMQVM+KVHHDKF
Sbjct: 128 NDATNMLVSAAYLTAKEINLDPLLILAVMAIESRFNPFAESPVGAQGLMQVMSKVHHDKF 187

Query: 219 QELGGIKAALNPVANIRVGSQILKEYVTRGGSVEAGLKSYVGAADMSNDGGYGIKVLSEY 278
            E+GG +AALNPVANIRVGS ILKEYV+RGGSVEAGLK YVGAA M +D GYG KVL EY
Sbjct: 188 AEMGGTQAALNPVANIRVGSLILKEYVSRGGSVEAGLKRYVGAAGMDSDAGYGAKVLGEY 247

Query: 279 QNLKQVAMGKNVSIYTT 295
             LK VA GK VS + T
Sbjct: 248 DRLKAVASGKRVSAFAT 264


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.315    0.128    0.351 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 665,453
Number of extensions: 24785
Number of successful extensions: 96
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 251
Effective length of database: 910,473
Effective search space: 228528723
Effective search space used: 228528723
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)