BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3487.p
         (494 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980595|ref|YP_001354025.1| 3-octaprenyl-4-hydroxybenzoate ...   891   0.0  

>gi|152980595|ref|YP_001354025.1| 3-octaprenyl-4-hydroxybenzoate
           carboxy-lyase [Janthinobacterium sp. Marseille]
          Length = 494

 Score =  891 bits (2302), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/494 (86%), Positives = 455/494 (92%)

Query: 1   MKYTDLRDFISKLQQKGELKRVSHPVSSRLEMTEIADRTLRAEGPALLFEQVDQKNIPVL 60
           MKY+DLRDFIS+LQQ GELKR++ PVS  LEMTEI DRTLRA GPALLFEQ   + IPVL
Sbjct: 1   MKYSDLRDFISQLQQMGELKRINVPVSPYLEMTEICDRTLRAAGPALLFEQPTGQKIPVL 60

Query: 61  ANLFGTPHRVALGMGAQSISELRRIGHLLARLKEPEPPKGIKDVLDLGGLVKSLWDMAPK 120
            NLFGTPHRVALGMGA  +SELR+IGH+LA LKEPEPPKG KD++ LG LVKS+WDMAPK
Sbjct: 61  GNLFGTPHRVALGMGATDVSELRKIGHVLAMLKEPEPPKGFKDIMGLGSLVKSIWDMAPK 120

Query: 121 ERSSAPCQDVVWEGQDVDLSRLPIQHCWPGDIAPLITWGLVITKGPHKKRQNLGIYRQQV 180
           E   APC D+VWEG DVDL+RLPIQHCWPGDIAPLITWGLVITKGPHKKRQNLGIYRQQV
Sbjct: 121 ELRGAPCHDIVWEGNDVDLARLPIQHCWPGDIAPLITWGLVITKGPHKKRQNLGIYRQQV 180

Query: 181 LGPNKVIMRWLAHRGGALDFREHCIAHPGQPYPVVVALGADPATILGAVTPVPDSLSEYQ 240
           +G NKVIMRWLA RGGALDFREH I + GQPYP+ VALGADPATILGAVTPVPDSLSEYQ
Sbjct: 181 IGRNKVIMRWLAQRGGALDFREHSIVNRGQPYPIAVALGADPATILGAVTPVPDSLSEYQ 240

Query: 241 FAGLLRGSRTELVKAMGSDLRVPASAEIVLEGHIYPDEHHASGFEHALEGPYGDHTGYYN 300
           FAGLLRGSRTELVKA+GS+LRVPASAEIVLEGHIYPDE H SG+EHALEGPYGDHTGYYN
Sbjct: 241 FAGLLRGSRTELVKALGSELRVPASAEIVLEGHIYPDESHPSGYEHALEGPYGDHTGYYN 300

Query: 301 EQDWFPVFTIDRITMRRDAIYHSTYTGKPPDEPAVLGVALNEVFVPLLQKQFAEITDFYL 360
           EQD FPVFTIDRITMRRD IYHSTYTGKPPDEPAVLGVALNEVF+PLLQKQF+EI DFYL
Sbjct: 301 EQDSFPVFTIDRITMRRDPIYHSTYTGKPPDEPAVLGVALNEVFIPLLQKQFSEILDFYL 360

Query: 361 PPEGCSYRMAVVQMKKSYAGHAKRVMFGVWSFLRQFMYTKFIVVVDEDVDIRDWKEVIWA 420
           PPEGCSYRMAVVQMKK+Y GHAKRVMFGVWSFLRQFMYTKFIVVVDEDV+IRDWKEVIWA
Sbjct: 361 PPEGCSYRMAVVQMKKAYPGHAKRVMFGVWSFLRQFMYTKFIVVVDEDVNIRDWKEVIWA 420

Query: 421 ITTRVDPVRDTVLVDNTPIDYLDFASPISGLGSKMGIDATNKWPGETNREWGTPIVMSDE 480
           ITTRVDP+RDT LVDNTPIDYLDFASP+SGLGSKMGIDATNKWPGET+REWG  I M+DE
Sbjct: 421 ITTRVDPIRDTTLVDNTPIDYLDFASPVSGLGSKMGIDATNKWPGETDREWGRTITMTDE 480

Query: 481 VKKRVDTIWKDLGI 494
           VKKRVD IW++LGI
Sbjct: 481 VKKRVDQIWQELGI 494


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.139    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,233,498
Number of extensions: 54856
Number of successful extensions: 120
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 1,221,021
Length adjustment: 87
Effective length of query: 407
Effective length of database: 899,382
Effective search space: 366048474
Effective search space used: 366048474
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)