BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3485.p
         (603 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982107|ref|YP_001352212.1| hypothetical protein mma_0522 [...    71   2e-13

>gi|152982107|ref|YP_001352212.1| hypothetical protein mma_0522
           [Janthinobacterium sp. Marseille]
          Length = 699

 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/178 (35%), Positives = 85/178 (47%), Gaps = 4/178 (2%)

Query: 90  GRDDEAVQRYDQILT--HNPAFTDALLARGAALRRLKRSREALADFERAVALAPDNADAW 147
           GR D AV    Q     H PA   + LA     R+     EA    +RAV+LAP+ ADAW
Sbjct: 64  GRLDMAVSHLRQACQAPHAPAIYFSNLAE--MCRQSGLLVEAEQAGQRAVSLAPNLADAW 121

Query: 148 FQLGNSQHEHYGYRDARASYERAVALRPDFIEAWFNLGNTCKDSYQFEEALRAYDRAIQE 207
             LG    E      +  S ERA+ALRP+   A  NLGNT +  Y+ E+A + Y +A++ 
Sbjct: 122 NNLGIILQESGKLEASLDSLERALALRPNDARAHNNLGNTWRRLYRLEQAEQHYQKALEL 181

Query: 208 QPDFFEAQSNRGYVLFKMQRPMEALEAYDRALALDDSSPDLWFNRGSTLEQLYRFNEA 265
           +P + E  SN  Y+L    R  EA  A   A++L     D + N         R+ EA
Sbjct: 182 EPGYAEVHSNLAYLLNTHGRFEEAAAAARHAISLQPQLVDAYLNLADIEVSRLRYAEA 239



 Score = 68.6 bits (166), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 85/336 (25%), Positives = 134/336 (39%), Gaps = 41/336 (12%)

Query: 12  LQKALALHQKGDLAPAEELYKKVLAKLPKHFEANYLYGMLKLHQEDWEAAEAQLAHAIEL 71
           L++A A    G    AE L + VL   P   +A +L G++       + A + L  A + 
Sbjct: 20  LKRAYAHWDAGQAQQAEMLCRHVLLAWPYQADAMHLLGLIAHAHGRLDMAVSHLRQACQ- 78

Query: 72  NPDHPDTYFDHAGALV-HLGRDDEAVQRYDQILTHNPAFTDALLARGAALRRLKRSREAL 130
            P  P  YF +   +    G   EA Q   + ++  P   DA    G  L+   +   +L
Sbjct: 79  APHAPAIYFSNLAEMCRQSGLLVEAEQAGQRAVSLAPNLADAWNNLGIILQESGKLEASL 138

Query: 131 ADFERAVALAPDNADAWFQLGNSQHEHYGYRDARASYERA-------------------- 170
              ERA+AL P++A A   LGN+    Y    A   Y++A                    
Sbjct: 139 DSLERALALRPNDARAHNNLGNTWRRLYRLEQAEQHYQKALELEPGYAEVHSNLAYLLNT 198

Query: 171 --------------VALRPDFIEAWFNLGNTCKDSYQFEEALRAYDRAIQEQPDFFEAQS 216
                         ++L+P  ++A+ NL +      ++ EALR+ D      P      S
Sbjct: 199 HGRFEEAAAAARHAISLQPQLVDAYLNLADIEVSRLRYAEALRSLDALYTFAPQHVGGFS 258

Query: 217 NRGYVLFKMQRPMEALEAYDRALALDDSSPDLWFNRGSTLEQLYRFNEATECYRRARELK 276
            R  +L KM+R  EAL    RAL     + +  +  G  L+ L R +EA   + +A  L 
Sbjct: 259 ARAQILRKMERNEEALIWAQRALISAPDNANAHYAHGQILQALGRHDEALLAFDKAAALP 318

Query: 277 PDANSATWNDALLKLRQGDFANGWKAFESRWATEQM 312
                +   DALL  R   F    ++ ++  A EQ+
Sbjct: 319 ----GSVEEDALLA-RATLFMESGRSEDASIAFEQV 349


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.134    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,401,140
Number of extensions: 57671
Number of successful extensions: 211
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 205
Number of HSP's successfully gapped: 5
Length of query: 603
Length of database: 1,221,021
Length adjustment: 89
Effective length of query: 514
Effective length of database: 891,988
Effective search space: 458481832
Effective search space used: 458481832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)