BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3483.p (487 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981130|ref|YP_001352218.1| ATP-dependent RNA helicase [Jan... 750 0.0 gi|152981148|ref|YP_001352987.1| ATP-dependent RNA helicase [Jan... 439 e-124 gi|152981099|ref|YP_001355159.1| ATP-dependent RNA helicase [Jan... 311 6e-86 gi|152981028|ref|YP_001352892.1| ATP-dependent RNA helicase [Jan... 309 3e-85 gi|152981080|ref|YP_001353634.1| ATP-dependent RNA helicase DbpA... 273 1e-74 >gi|152981130|ref|YP_001352218.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille] Length = 513 Score = 750 bits (1937), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/491 (78%), Positives = 418/491 (85%), Gaps = 8/491 (1%) Query: 4 TTSASAAPAAPAVRFEDFGLSPDILKALAEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTG 63 T+ A+A A PAVRFEDFGL+P+IL+AL++QGYVHPTPIQA+AIPVVLQG DVMGAAQTG Sbjct: 24 TSPAAAVDAHPAVRFEDFGLAPEILRALSDQGYVHPTPIQAEAIPVVLQGIDVMGAAQTG 83 Query: 64 TGKTAGFSLPIIQRLLAHASHSASPARHPVRALILTPTRELADQVADNVAAYCRFTPLRS 123 TGKTAGFSLPIIQ L+AHA+ SASPARHPVRALILTPTRELADQVADNV AY R TPLRS Sbjct: 84 TGKTAGFSLPIIQLLMAHANSSASPARHPVRALILTPTRELADQVADNVKAYSRHTPLRS 143 Query: 124 TVVFGGVDMAPQTAILRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRMLDMGF 183 VVFGGVDMAPQTA LR+GVEIVIATPGRLLDH+QQKT+NLSQTQILVMDEADRMLDMGF Sbjct: 144 VVVFGGVDMAPQTAALRSGVEIVIATPGRLLDHIQQKTLNLSQTQILVMDEADRMLDMGF 203 Query: 184 LPDLQRIINLLPKQRQNLLFSATFSPEIKKLAASFQNNPVTIEVARSNATAENVTQTIYK 243 LPDLQRIINLLPKQRQNL+FSATFSPEIKKLAA+F +PVTIEVARSNATAENVTQ +YK Sbjct: 204 LPDLQRIINLLPKQRQNLMFSATFSPEIKKLAATFLKDPVTIEVARSNATAENVTQIVYK 263 Query: 244 VEEAAKADAVSFIIRQRELKQVIVFSNTKIGASRLARTLLAEGVKASAIHGDKTQSERMA 303 VEE K DAVS+IIR+R LKQVIVFSNTKIGASRLAR L EGVKASAIHGDK+Q+ERMA Sbjct: 264 VEEGDKGDAVSYIIRERGLKQVIVFSNTKIGASRLARQLENEGVKASAIHGDKSQAERMA 323 Query: 304 ALEAFKQGQIEVLVATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRAGASGDAI 363 ALEAFK G IEVLVATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRAGASGDAI Sbjct: 324 ALEAFKNGTIEVLVATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRAGASGDAI 383 Query: 364 SLFCDKDERLLVDIEKLIKKKFERAELSGFAP---RA--RHERSERSERSE-RGERSERG 417 SL+ DKD RLLVDIEK+IK KF A+L+GF P RA R ERS R + SE RG SER Sbjct: 384 SLYSDKDARLLVDIEKMIKHKFVPAQLAGFVPAGNRASERKERSPRRDDSESRGRGSERR 443 Query: 418 ERGERSDRGERSRSSREGGAPAARREKIDPWFLKPYEPSTTETVSTKP-ELAKNNRPKPK 476 E R G R SR A A R+EKIDP+F KPYEP+ + KP E A PK K Sbjct: 444 ESAPREASGGRDPGSRSAYA-APRKEKIDPFFTKPYEPAPSTISEAKPAEQAPAKPPKHK 502 Query: 477 VAALLGGMPKR 487 +AALLGG PKR Sbjct: 503 MAALLGGAPKR 513 >gi|152981148|ref|YP_001352987.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille] Length = 448 Score = 439 bits (1128), Expect = e-124, Method: Compositional matrix adjust. Identities = 213/379 (56%), Positives = 278/379 (73%), Gaps = 1/379 (0%) Query: 18 FEDFGLSPDILKALAEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQR 77 F D GL+ I++A+ E GY +PTPIQAQAIP VL G D++ AQTGTGKTAGF+LPI+ R Sbjct: 3 FTDLGLAEGIVRAVTESGYTNPTPIQAQAIPAVLAGGDLLAGAQTGTGKTAGFTLPILHR 62 Query: 78 LLAHAS-HSASPARHPVRALILTPTRELADQVADNVAAYCRFTPLRSTVVFGGVDMAPQT 136 L + H+++ A+ P+RAL+LTPTRELA QV ++V Y ++ L S V+FGGV + PQ Sbjct: 63 LATSGTPHASASAQRPIRALVLTPTRELAAQVEESVRTYGKYLNLNSAVIFGGVGINPQI 122 Query: 137 AILRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRMLDMGFLPDLQRIINLLPK 196 +L+ GV+I++ATPGRLLDH+QQ TVNL+ QILV+DEADRMLDMGF+ D++R++ LPK Sbjct: 123 KMLKHGVDILVATPGRLLDHMQQGTVNLNHIQILVLDEADRMLDMGFIKDIRRVLAALPK 182 Query: 197 QRQNLLFSATFSPEIKKLAASFQNNPVTIEVARSNATAENVTQTIYKVEEAAKADAVSFI 256 RQNLLFSATFS EIK LA N+P TIEVAR N+T E + Q I+ V+ K ++ + Sbjct: 183 NRQNLLFSATFSNEIKALADGLLNSPATIEVARRNSTVEIIEQKIHPVDRDKKHPMLAHL 242 Query: 257 IRQRELKQVIVFSNTKIGASRLARTLLAEGVKASAIHGDKTQSERMAALEAFKQGQIEVL 316 I+ QV+VF+ TK GA++L L +G+ AIHG+K+QS R AL FK G ++VL Sbjct: 243 IKSNNWSQVLVFTRTKHGANKLVEQLEKDGISGMAIHGNKSQSARTRALSEFKDGSLQVL 302 Query: 317 VATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRAGASGDAISLFCDKDERLLVD 376 VATD+AARG+DI +LP V+NYDLP EDYVHRIGRTGRAGA+G+A+SL C + +L D Sbjct: 303 VATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELEMLKD 362 Query: 377 IEKLIKKKFERAELSGFAP 395 IEKLIK+K + GF P Sbjct: 363 IEKLIKRKLPSEVIPGFEP 381 >gi|152981099|ref|YP_001355159.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille] Length = 778 Score = 311 bits (797), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 162/374 (43%), Positives = 233/374 (62%), Gaps = 9/374 (2%) Query: 18 FEDFGLSPDILKALAEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQR 77 F D LS +L+ L E GY P+PIQA IP++L RDV+G AQTGTGKTA F+LPI+ R Sbjct: 9 FADLKLSEPLLRVLQELGYESPSPIQAATIPLLLNNRDVLGQAQTGTGKTASFALPILAR 68 Query: 78 LLAHASHSASPARHPVRALILTPTRELADQVADNVAAYCRFTP-LRSTVVFGGVDMAPQT 136 + + +P +AL+L PTRELA QVA+ Y + P ++GG Q Sbjct: 69 IDIKQT---TP-----QALVLAPTRELAIQVAEAFQRYATYIPGFHVLPIYGGQSYGAQL 120 Query: 137 AILRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRMLDMGFLPDLQRIINLLPK 196 + LR GV +V+ TPGR++DH+++ +++LS+ + +V+DEAD ML MGF+ D++ I+ P+ Sbjct: 121 SALRRGVHVVVGTPGRVIDHLEKGSLDLSRIKTMVLDEADEMLRMGFIDDVETILQKTPE 180 Query: 197 QRQNLLFSATFSPEIKKLAASFQNNPVTIEVARSNATAENVTQTIYKVEEAAKADAVSFI 256 RQ LFSAT IK++A ++ +P I VA TA+N+ Q + V K DA++ I Sbjct: 181 SRQTALFSATMPSAIKRIATTYLRDPDLITVAAKTGTADNIRQRYWLVSGMQKLDALTRI 240 Query: 257 IRQRELKQVIVFSNTKIGASRLARTLLAEGVKASAIHGDKTQSERMAALEAFKQGQIEVL 316 + +I+F+ TK+G LA L A G A+AI+GD Q +R ++ K G+I++L Sbjct: 241 LEAENFDGMIIFARTKLGTEELASKLQARGFSAAAINGDIQQQQRERTIQQLKDGKIDIL 300 Query: 317 VATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRAGASGDAISLFCDKDERLLVD 376 VATDVAARGLD+ + VINYD+P++ E Y HRIGRTGRAG SG+AI ++ LL Sbjct: 301 VATDVAARGLDVERISHVINYDVPHDPESYTHRIGRTGRAGRSGEAILFIAPRERNLLKA 360 Query: 377 IEKLIKKKFERAEL 390 IE+ ++ EL Sbjct: 361 IERATRQPISVLEL 374 >gi|152981028|ref|YP_001352892.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille] Length = 466 Score = 309 bits (791), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 178/459 (38%), Positives = 255/459 (55%), Gaps = 34/459 (7%) Query: 18 FEDFGLSPDILKALAEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQR 77 FE GL I+KAL E GY PT +QAQAIP ++GRD+M ++QTG+GKTA F LP + + Sbjct: 3 FESLGLHASIIKALTESGYTAPTGVQAQAIPAAIEGRDMMVSSQTGSGKTAAFMLPALHK 62 Query: 78 LLAHA-----------------SHSASPARHPV--RALILTPTRELADQVADNVAAYCRF 118 + S P P + L+LTPTRELA QV + Y F Sbjct: 63 FASEGDQPQTGKTPNQEAQSARSRGDRPRFKPAQPKMLVLTPTRELALQVTTSTDKYGAF 122 Query: 119 TP-LRSTVVFGGVDMAPQTAILRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADR 177 +++ + GG+ Q +L EI++ATPGRL+DH++ ++ SQ QILV+DEADR Sbjct: 123 MKRVKAVSILGGMPYPKQMQLLAKNPEILVATPGRLIDHMESGKIDFSQLQILVLDEADR 182 Query: 178 MLDMGFLPDLQRIINLLPKQRQNLLFSATFSPEIKKLAASFQNNPVTIEVARSNATAENV 237 MLDMGF+ D+++I+ P+ RQ +LFSAT + +A + + I++A S EN+ Sbjct: 183 MLDMGFIDDIEKIVAATPEGRQTMLFSATLDGMVGNMAKRITKDALIIQIAGSATKHENI 242 Query: 238 TQTIYKVEE-AAKADAVSFIIRQRELKQVIVFSNTKIGASRLARTLLAEGVKASAIHGDK 296 Q ++ V++ + K + ++R + Q +VF+ TK A +A L G A+A+HGD Sbjct: 243 KQCVHFVDDLSHKNRMLDHLLRDETMDQAVVFTATKRDADTIADRLNIAGFAAAALHGDM 302 Query: 297 TQSERMAALEAFKQGQIEVLVATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRA 356 Q R L+ ++GQI VLVATDVAARG+D+ + V+NYDLP EDYVHRIGRTGRA Sbjct: 303 HQGARNRTLDGLRRGQIRVLVATDVAARGIDVPGITHVVNYDLPKFPEDYVHRIGRTGRA 362 Query: 357 GASGDAISLFCDKDERLLVDIEKLIKKKFERAELSGF-------APRARHERSERSERSE 409 G +G A+SL + + IE+ IK+ + GF APR+ H+ Sbjct: 363 GRNGIAVSLVNHAESMNVKRIERFIKQLIPVEVIEGFEPKRSASAPRSNHKPGGWKPGDN 422 Query: 410 RGERSERGER------GERSDRGERSRSSREGGAPAARR 442 RG ++ G+R R D ++ R G A A RR Sbjct: 423 RGNTAKPGQRTFSKPNAPRKDGSSFNKGPRTGDAGATRR 461 >gi|152981080|ref|YP_001353634.1| ATP-dependent RNA helicase DbpA [Janthinobacterium sp. Marseille] Length = 478 Score = 273 bits (699), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 154/377 (40%), Positives = 225/377 (59%), Gaps = 10/377 (2%) Query: 15 AVRFEDFGLSPDILKALAEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPI 74 A F LSP +L L GY TPIQAQ++PV+L+ RD++ A+TG+GKTA F + + Sbjct: 18 ATSFSSLALSPAMLSNLDSLGYREMTPIQAQSLPVILELRDLIAQAKTGSGKTAAFGIGL 77 Query: 75 IQRLLAHASHSASPARHPVRALILTPTRELADQVADNVAAYCRFTP-LRSTVVFGGVDMA 133 +Q+L +P V+AL++ PTRELADQV++ + R T ++ + GG M Sbjct: 78 LQKL--------NPTWFAVQALVICPTRELADQVSNELRRLARATENIKVLTLCGGAPMR 129 Query: 134 PQTAILRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRMLDMGFLPDLQRIINL 193 PQ A L G IV+ TPGR+ DH+ ++T+NLS+ Q LV+DEADRM+DMGF ++ I++ Sbjct: 130 PQIASLEHGAHIVVGTPGRIRDHISRETINLSKVQTLVLDEADRMVDMGFYEEIAGIVSA 189 Query: 194 LPKQRQNLLFSATFSPEIKKLAASFQNNPVTIEVARSNATAENVTQTIYKVEEAAKADAV 253 P +RQ LLFSAT+ +I++ +A F +PV I+V + ++ + Q Y V+ + AV Sbjct: 190 CPTRRQTLLFSATYPDDIRRASAEFLRDPVEIKVEAQHDDSQ-IEQRFYAVDYDDRNAAV 248 Query: 254 SFIIRQRELKQVIVFSNTKIGASRLARTLLAEGVKASAIHGDKTQSERMAALEAFKQGQI 313 + +++ + F NTKI LA L A+G A A++G+ Q ER L F Sbjct: 249 ATLLKHYRPVSTLAFCNTKIHCRELAAELRAQGFSALALYGELEQRERDEILVLFANQSC 308 Query: 314 EVLVATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRAGASGDAISLFCDKDERL 373 VLVATDVAARGLDI L VIN D+ + E ++HRIGRTGR G A+SL +++ Sbjct: 309 SVLVATDVAARGLDIQSLGAVINVDVSKDTEVHIHRIGRTGRGQDKGLALSLCAPNEKKW 368 Query: 374 LVDIEKLIKKKFERAEL 390 + IE+ K + +L Sbjct: 369 VKLIEEYQNKPVQWFDL 385 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.317 0.131 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 855,548 Number of extensions: 30151 Number of successful extensions: 134 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 123 Number of HSP's successfully gapped: 6 Length of query: 487 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 400 Effective length of database: 899,382 Effective search space: 359752800 Effective search space used: 359752800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)