BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3482.p
         (294 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980417|ref|YP_001352219.1| glutamyl-tRNA synthetase relate...   398   e-112
gi|152980247|ref|YP_001352803.1| glutamyl-tRNA synthetase [Janth...   130   1e-31

>gi|152980417|ref|YP_001352219.1| glutamyl-tRNA synthetase related
           protein [Janthinobacterium sp. Marseille]
          Length = 293

 Score =  398 bits (1023), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 191/289 (66%), Positives = 221/289 (76%)

Query: 6   YVGRFAPSPSGPLHAGSLVAALASYLDARVHQGRWLLRIEDIDETRTVPGVADDIIATLA 65
           Y+GRFAPSPSGPLHAGSLVAA+ASYLDA+ HQG+WL+RIEDIDETRTV      I+  LA
Sbjct: 5   YIGRFAPSPSGPLHAGSLVAAMASYLDAKAHQGQWLVRIEDIDETRTVADATTAIMDALA 64

Query: 66  ALDMHSDGPVLVQSQRKARYELARQRLGALAYPCGCSRKEIADSRVGTASDGAAIYPGTC 125
              M  DG V+VQSQRK  Y+ A +RL  L YPCGC+R+EIADSR+G A+DGAAIYPGTC
Sbjct: 65  VFGMQHDGEVVVQSQRKDLYQAAFERLKDLVYPCGCTRREIADSRLGVAADGAAIYPGTC 124

Query: 126 RPGLAPGKPARTLRLRVPDAGQPGELVQFQDRWLGPQAQHLASEVGDFVLQRADGFWAYQ 185
           R GLA GK ART R+RVPDA +  E + F DRWLGP  QHLASEVGDFVL+RADGFWAYQ
Sbjct: 125 RHGLAAGKTARTWRVRVPDANENNEAINFDDRWLGPLTQHLASEVGDFVLKRADGFWAYQ 184

Query: 186 LAVVVDDAEQGVTDIVRGADLLDSTARQIYLQRLLGYPTPRYLHVPLLMNTTGEKFSKQN 245
           LAVVVDDA+Q VT IVRG DLL+ST RQIYLQR+LG+PTP Y+HVP+++N  GEK SKQ 
Sbjct: 185 LAVVVDDADQEVTHIVRGTDLLESTGRQIYLQRMLGFPTPHYMHVPVVLNDVGEKLSKQT 244

Query: 246 GAQALDLGQPLQALQQAAAFLGLETGAARDREGFWRLALTGWQARFGPQ 294
           GA ALDL  P+  L +AA FL L          FWR+A+  W  RF  +
Sbjct: 245 GALALDLAHPMDELMKAARFLELSLPPVNSITEFWRVAIAAWARRFAQE 293


>gi|152980247|ref|YP_001352803.1| glutamyl-tRNA synthetase
           [Janthinobacterium sp. Marseille]
          Length = 463

 Score =  130 bits (326), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 103/296 (34%), Positives = 144/296 (48%), Gaps = 29/296 (9%)

Query: 9   RFAPSPSGPLHAGSLVAALASYLDARVHQGRWLLRIEDIDETRTVPGVADDIIATLAALD 68
           RFAPSP+G LH G    AL S+  AR   G ++LRIED D  R+ P     II  +  L 
Sbjct: 6   RFAPSPTGYLHVGGARTALFSWAYARHFGGTFVLRIEDTDLERSTPEAVQAIIEGMEWLG 65

Query: 69  MHSDGPVLVQSQRKARY-ELARQRLGA-LAYPCGCSRKEIADSRVGTASDGAAI-YPGTC 125
           +H D     Q QR  RY E+  Q L A  AY C  S +E+   R    + G    Y GT 
Sbjct: 66  LHHDEGPFYQMQRMDRYREVIGQMLAAGTAYHCYSSPEEVEAMRERQRAAGEKPRYDGTW 125

Query: 126 RPGLAPGKPARTLRLRVPDAGQPGELVQFQD------RWLGPQAQHLA---SEVGDFVLQ 176
           RP      PA      +P+  +P  +V+F++       WL      +     E+ D V+ 
Sbjct: 126 RPEAGKTLPA------IPEGRKP--VVRFRNPTEGDVTWLDVVKGSITISNRELDDLVIA 177

Query: 177 RADGFWAYQLAVVVDDAEQGVTDIVRGADLLDSTARQIYLQRLLGYPTPRYLHVPLLMNT 236
           R DG   Y   V VDD++  +T ++RG D +++T RQI + + LG   P Y H+P+++ T
Sbjct: 178 RPDGTPTYNFCVAVDDSDMKITHVIRGDDHVNNTPRQINILQALGATLPHYGHLPMILGT 237

Query: 237 TGEKFSKQNGAQALDLGQPLQ-----ALQQAAAFLGLETGAARDREGFWRLALTGW 287
            GEK SK++GA ++ +  P Q     A+    A LG   G   D E F     T W
Sbjct: 238 DGEKLSKRHGAVSV-MDYPAQGYLPEAMLNYLARLGWSHG---DDEVFSMEQFTQW 289


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.137    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 657,006
Number of extensions: 24433
Number of successful extensions: 77
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 2
Length of query: 294
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 211
Effective length of database: 914,170
Effective search space: 192889870
Effective search space used: 192889870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)