BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3481.p (312 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982198|ref|YP_001352220.1| LysR family transcriptional reg... 402 e-113 gi|152982861|ref|YP_001352810.1| LysR family transcriptional reg... 133 2e-32 gi|152982816|ref|YP_001352236.1| LysR family transcriptional reg... 100 1e-22 gi|152982201|ref|YP_001352928.1| LysR family transcriptional reg... 87 1e-18 gi|152982810|ref|YP_001352193.1| LysR family transcriptional reg... 68 8e-13 >gi|152982198|ref|YP_001352220.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 305 Score = 402 bits (1032), Expect = e-113, Method: Compositional matrix adjust. Identities = 199/303 (65%), Positives = 244/303 (80%) Query: 1 VNLTLESLLILDMIDRKGSFAAAAVALDRVPSALTYSVRKLEDDLDVLLFDRRGHRAQLT 60 +NLTLE++ ILD IDRKGSFAAAAVALDRVPSALTYSVRKLE+DLDVLLFDRRGHRA+LT Sbjct: 1 MNLTLEAIRILDTIDRKGSFAAAAVALDRVPSALTYSVRKLEEDLDVLLFDRRGHRAKLT 60 Query: 61 PAGLQLLQEGRHLLLAASDLEQRVKRTATGRETELHIVLNSLIPFDKMLPVIAAFDREQS 120 AG +LL EGRHLL AA +LEQRVKRTA+G E EL IVL+S+IPF+KMLP+I FD E S Sbjct: 61 AAGQELLTEGRHLLRAADELEQRVKRTASGWEVELRIVLDSIIPFEKMLPLIREFDAEGS 120 Query: 121 GTRLRFTPGVLTGAWEKLIEGRANLVIGVTLDGPEVVRTSGRFQMQELGAVDWVFAVAPQ 180 GT+LRF+ VL+G WE L G A+L IGV+ DGPE+VR SG F+++ LG VDWVFAVAP Sbjct: 121 GTQLRFSTEVLSGVWETLTSGAADLAIGVSSDGPEIVRGSGDFRVRPLGEVDWVFAVAPG 180 Query: 181 HPLASVIEPLSAELVRSHRAIAVGDNSQSLPTLTMGLLSGQETLTVATVADKLQAQLAGL 240 HPLA + +PL+ +LV+ +RA+A GD+ + LP+++ GLL+GQ TLTV + +KL+AQLAGL Sbjct: 181 HPLAGMPDPLAPQLVQQYRAVAAGDSGRFLPSVSAGLLTGQATLTVPDIHEKLKAQLAGL 240 Query: 241 GCGHLPRIWAAPYLASGALVEKQTLAAKPNDNFMVAWPKAEQGKSLKWFIQYLAQPHVRQ 300 GCGHLPR WAAPYLASG L+EKQT+ KP AW + +GK LKWF+ LA P V++ Sbjct: 241 GCGHLPRKWAAPYLASGELIEKQTVETKPTGLPQYAWRSSSRGKCLKWFLNKLADPDVQR 300 Query: 301 SLM 303 L+ Sbjct: 301 ELL 303 >gi|152982861|ref|YP_001352810.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 311 Score = 133 bits (334), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 82/284 (28%), Positives = 135/284 (47%), Gaps = 5/284 (1%) Query: 6 ESLLILDMIDRKGSFAAAAVALDRVPSALTYSVRKLEDDLDVLLFDRRGHRAQLTPAGLQ 65 E+L + + SF AA L SA++Y+++++E L+V LF R +LT +G Sbjct: 8 ENLHTFTTVVKHASFRKAAEELGITTSAVSYTIKRMETYLEVTLFIRNTRNIELTESGFY 67 Query: 66 LLQEGRHLLLAASDLEQRVKRTATGRETELHIVLNSLIPFDKMLPVI-AAFDREQSGTRL 124 ++ LL +++ + G E ++ I +NSL+ + ++ A + ++ Sbjct: 68 FYRKAEELLHEFHAIKRGIYTMEQGIEAKIRICINSLLHTPRHTALLLQALKKHFPTCQI 127 Query: 125 RFTPGVLTGAWEKLIEGRANLVIGVTLDGPEVVRTSGRFQMQELGAVDWVFAVAPQHPLA 184 T V G W+ +I ++ IG P + G E+G + W F +AP HPLA Sbjct: 128 AVTTEVYNGVWDAIINNNVDIAIG----APGTLMEGGGIDYAEIGYIKWEFVLAPSHPLA 183 Query: 185 SVIEPLSAELVRSHRAIAVGDNSQSLPTLTMGLLSGQETLTVATVADKLQAQLAGLGCGH 244 EP+ +R AI V D++ ++ LL GQE + V K Q Q+ G G G Sbjct: 184 REQEPIPESQLRLFPAITVKDSAYTINKKVGWLLYGQEAIQVPDFNAKCQCQILGNGIGF 243 Query: 245 LPRIWAAPYLASGALVEKQTLAAKPNDNFMVAWPKAEQGKSLKW 288 LP A +L SGALV KQ + N N ++A ++ G+ +W Sbjct: 244 LPDYLVAEHLQSGALVRKQVQNPRQNSNMLLATQQSTSGQVTQW 287 >gi|152982816|ref|YP_001352236.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 302 Score = 100 bits (248), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 85/294 (28%), Positives = 136/294 (46%), Gaps = 12/294 (4%) Query: 4 TLESLLILDMIDRKGSFAAAAVALDRVPSALTYSVRKLEDDLDVLLFDRRGHRAQLTPAG 63 TL+ L + + GSF+ AA L R S ++Y++ LE L+V LFDR + LT AG Sbjct: 8 TLDQLRVFVAVIDCGSFSRAARELHRTQSVVSYTIANLEAQLNVELFDRSKRKPTLTEAG 67 Query: 64 LQLLQEGRHLLLAASDLEQRVKRTATGRETELHIVLNSLIPFDKMLPVIAAFDRE--QSG 121 LL + R + + + R K A G E E+ + ++ + P +++ + AF +E G Sbjct: 68 KALLADARTVGMKVDAMRARAKTLAQGLEAEVSLAVDVMFPNCRLVQALKAFQQEFPTVG 127 Query: 122 TRLRFTPGVLTGAWEKLIEGRANLVIGVTLDGPEVVRTSGRFQMQELGAVDWVFAVAPQH 181 RLR GA L+ G IG+T GP ++ S FQ Q+LG + V +P H Sbjct: 128 LRLRIEA---LGAVMHLV-GERVCQIGIT--GP-MLDFSDTFQHQQLGHITMVPVASPDH 180 Query: 182 PLASVIEPLSAELVRSHRAIAVGDNSQSLPTLTMGLLSGQETLTVATVADKLQAQLAGLG 241 PL + + E+ R H + + D SQ G+++ ++ + + K L GLG Sbjct: 181 PLGKMEGIIPTEVARDHTQLVLTDRSQLTAGQNFGVIALRD-WRLGDLGAKHMLLLNGLG 239 Query: 242 CGHLPRIWAAPYLASGALVEKQ--TLAAKPNDNFMVAWPKAEQGKSLKWFIQYL 293 G +P L SG L Q + + +M+ G + +W +QY Sbjct: 240 WGSMPEEMIRADLESGRLKHLQLALMVSGQYSLYMINRVDEAPGVAGRWLMQYF 293 >gi|152982201|ref|YP_001352928.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 304 Score = 87.0 bits (214), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 82/303 (27%), Positives = 130/303 (42%), Gaps = 16/303 (5%) Query: 1 VNLTLESLLILDMIDRKGSFAAAAVALDRVPSALTYSVRKLEDDLDVLLFDRRGHRAQLT 60 + +LE L ++ GSF+A A L + S ++ ++ +E D+++ LFDR + LT Sbjct: 1 MRFSLEQLETFLLVAETGSFSATARKLGKTQSTVSAAIANIEIDMNLSLFDRTTRKPTLT 60 Query: 61 PAGLQLLQEGRHLLLAASDLEQRVKRTATGRETELHIVLNSLIPFDKMLPVIAAFDREQS 120 AG +LL E ++ LE EL + + IP++ ++PV++AF+ E Sbjct: 61 AAGQKLLIEAEAVMERCIALEAHADSLGDSNPAELTLAIE--IPYNTVMPVLSAFEAEFP 118 Query: 121 GTRLRFTPGVLTGAWEKLIEGRANLVIGVTLDGPEVVRTSGRFQMQELGAVDWVFAVAPQ 180 L V E +++G +L I G +LG + V P Sbjct: 119 FIDLTIRNPVYGDVSELVLKGEVDLGIAFAQPG-----YPSELNFTQLGRLVMVHITHPD 173 Query: 181 HPLASVIEPLSAELVRSHRAIAVGDNSQSLPTLTMGLLSGQETLTVATVADKLQAQLAGL 240 HPLA IE +S + HR +A ++ LP T L + + ++ AGL Sbjct: 174 HPLAK-IEKVSFSDLHIHRHLAFSAHANKLP--TTEYLRATKVWQAESYLALIEMVRAGL 230 Query: 241 GCGHLPRIWAAPYLASGALVEKQTLAAKPNDNFMVA----WPKAEQ-GKSLKWFIQYLAQ 295 G LPR L G LVE Q L A P +++V W K Q + +W + Q Sbjct: 231 GWATLPRQLIHRELEQGDLVELQ-LEAYPYTDWLVGVDLLWQKRRQPAAAERWLRERFQQ 289 Query: 296 PHV 298 V Sbjct: 290 NKV 292 >gi|152982810|ref|YP_001352193.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 294 Score = 67.8 bits (164), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 64/230 (27%), Positives = 104/230 (45%), Gaps = 14/230 (6%) Query: 18 GSFAAAAVALDRVPSALTYSVRKLEDDLDVLLFDRRGHRAQLTPAGLQLLQEGRHLLLAA 77 GS +AAA L + SA++ ++ LE DL LFDR QLTPAG +L E R LL A Sbjct: 18 GSISAAARRLGKAQSAVSTAIALLEADLGFELFDRSRRSVQLTPAGEVMLLEARELLRQA 77 Query: 78 SDLEQRVKRTATGRETELHIVLNSLIPFDKMLPVIAAFDREQSGTRLRFTPGVLTGAWEK 137 L+ R + A G++ +L + L+ +P+ + ++ + L G T E Sbjct: 78 EGLDHRAQSFAAGQQPKLTLALDEALPYLAVGALVKEISQRFPSLELSQLNGTATEVAEY 137 Query: 138 LIEGRANLVIGVTLDGPEVVRTSGRFQMQELGAVDWVFAVAPQHPLASVIEPLSAELVRS 197 + + RA++ GP S F + +G+V V HPL + + +L + Sbjct: 138 VEKQRASVAFHFD-RGP----CSLSFAQKHIGSVAQGIFVGRGHPLTKIKKVTQRDLAK- 191 Query: 198 HRAIAVGDNSQSLPTLTMGLLSGQETLTVAT-VADKLQAQLAGLGCGHLP 246 HR + + + + P L+ + ++A VAD G+G LP Sbjct: 192 HRQLLMHMDDYADPALSPSVWRSDSFYSIAAMVAD-------GIGWAILP 234 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.135 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 694,845 Number of extensions: 27489 Number of successful extensions: 143 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 138 Number of HSP's successfully gapped: 7 Length of query: 312 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 229 Effective length of database: 914,170 Effective search space: 209344930 Effective search space used: 209344930 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)