BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3480.p
         (233 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981404|ref|YP_001352221.1| pirin-related protein [Janthino...   357   e-100
gi|152981003|ref|YP_001354996.1| pirin family protein [Janthinob...    79   3e-16

>gi|152981404|ref|YP_001352221.1| pirin-related protein
           [Janthinobacterium sp. Marseille]
          Length = 232

 Score =  357 bits (917), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 166/231 (71%), Positives = 199/231 (86%)

Query: 1   MIEIRKANDRGHANHGWLDSYHSFSFADYYDPKHMGFGPLRVINEDRVAAGQGFGTHGHR 60
           M EIRK+ DRGHANHGWLDS+H+FSFADYYD KHMGFGPLRVINEDRV AGQGFGTHGHR
Sbjct: 1   MFEIRKSEDRGHANHGWLDSHHTFSFADYYDEKHMGFGPLRVINEDRVHAGQGFGTHGHR 60

Query: 61  DMEIISYVLEGELAHKDSMGNGSVIRPGDVQRMSAGTGVRHSEYNHSQDGTTHFLQIWIM 120
           DMEIISYVLEGELAHKDSMG GSVIRPGDVQRMSAG+GVRHSE+NHS++ TTHFLQIWI 
Sbjct: 61  DMEIISYVLEGELAHKDSMGTGSVIRPGDVQRMSAGSGVRHSEFNHSKEQTTHFLQIWIQ 120

Query: 121 PDRAGAEPGYQEAHFSAADKEGKLRLVASPDGRDGSVSMNQDALLFAGLFDGTQAAQYTL 180
           P+  G  P Y+E HF+A +K G+LRL+AS DG DGSV ++QDA L+AGLFDG + A+ TL
Sbjct: 121 PNVNGIPPSYEEKHFAAEEKRGRLRLIASEDGTDGSVLIHQDAKLYAGLFDGAETAELTL 180

Query: 181 PQGRLGYVHVARGKVSVNGQSLEAGDAVKLSAVDRIEIADGEKAEVLLFDL 231
            +GR  +VH+ARG V+VNG +L+ GDA+K++    ++I+DG++AEVL+FDL
Sbjct: 181 AKGRRAFVHIARGSVTVNGVALKTGDALKVTDEQSLKISDGQQAEVLVFDL 231


>gi|152981003|ref|YP_001354996.1| pirin family protein
           [Janthinobacterium sp. Marseille]
          Length = 288

 Score = 78.6 bits (192), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/196 (33%), Positives = 96/196 (48%), Gaps = 23/196 (11%)

Query: 53  GFGTHGHRDMEIISYVLEGELAHKDSMGNGSVIRPGDVQRMSAGTGVRHSEYNHSQ---- 108
           G G+H HR  E ++ V +GE+ H+DS G G VI PGDVQ M+AG G+ H E+ HSQ    
Sbjct: 57  GVGSHPHRGFETVTIVYKGEVEHRDSTGQGGVIGPGDVQWMTAGAGILHEEF-HSQAFTR 115

Query: 109 -DGTTHFLQIWI-MP--DRAGAEPGYQE------AHFSAADKEGKLRLVASP-DGRDGSV 157
             G    +Q+W+ +P  D+  A PGYQ          +  D  G +R++A    G  G  
Sbjct: 116 SGGALEMVQLWVNLPAKDKMTA-PGYQAIVDRDIPAVAMPDGAGTVRVIAGEYQGHAGPA 174

Query: 158 SMNQDALLFAGLFDGTQAAQYTLPQGRLGYVHVARGKVSVNGQSLEAGDAVKLSAVDR-- 215
                  +     +    A+  +P G    + V RG V VNG+++ A DA ++  +DR  
Sbjct: 175 HTFTPMHVLDVRLNQGSVAELPVPDGWNSALIVLRGTVLVNGEAV-ARDA-QMVLLDRAG 232

Query: 216 --IEIADGEKAEVLLF 229
             + I     A VLL 
Sbjct: 233 SNLTIEANSDAVVLLI 248


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.136    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 627,105
Number of extensions: 28132
Number of successful extensions: 68
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 2
Length of query: 233
Length of database: 1,221,021
Length adjustment: 80
Effective length of query: 153
Effective length of database: 925,261
Effective search space: 141564933
Effective search space used: 141564933
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)