BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3479.p
         (191 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980855|ref|YP_001353870.1| trp repressor binding protein [...    59   2e-10

>gi|152980855|ref|YP_001353870.1| trp repressor binding protein
           [Janthinobacterium sp. Marseille]
          Length = 202

 Score = 58.9 bits (141), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 61/138 (44%), Gaps = 13/138 (9%)

Query: 4   VAIVYHSGYGHTKKQAEAVQAGAAGVAGAAVELIAISAEGTITDE-------------QW 50
           + ++Y+S +G T+K AE +  G   V G    L  + A  T+ +              + 
Sbjct: 8   ILVLYYSRHGSTRKLAELIGQGIDSVPGCEARLRTVPAVSTVIEATEPEVPNEGAPYVEL 67

Query: 51  ASLDAADAIIFGSPTYMGTVSWQFKKFADASSKPWFSQKWKDKVGAAFTNSATMNGDKLS 110
             L+    +  GSPT  G ++   K F D +S  W S     K    FT++ +++G + S
Sbjct: 68  QDLEECAGLALGSPTRFGNMASAMKYFWDGTSAQWLSGALNGKPACVFTSTGSLHGGQES 127

Query: 111 TLHYLFTLGMQHSMIWVG 128
           TL  +    + H M+ +G
Sbjct: 128 TLLSMMLPLLHHGMLVLG 145


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.314    0.127    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 402,137
Number of extensions: 14724
Number of successful extensions: 30
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 1,221,021
Length adjustment: 78
Effective length of query: 113
Effective length of database: 932,655
Effective search space: 105390015
Effective search space used: 105390015
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)