BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3478.p
         (293 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981253|ref|YP_001352223.1| rhodanese superfamily protein [...   428   e-121
gi|152981000|ref|YP_001355200.1| hypothetical protein mma_3510 [...   155   4e-39

>gi|152981253|ref|YP_001352223.1| rhodanese superfamily protein
           [Janthinobacterium sp. Marseille]
          Length = 279

 Score =  428 bits (1101), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 194/274 (70%), Positives = 232/274 (84%)

Query: 6   TPYVNIAAYKFVSFDDTVEKRPVFLEFCRQHNLRGTVILSPEGINLFLAGLRQDIDAFLN 65
           + +VNIAAYKF++FDDT EKRP FL  C + +L+GT++L+PEGIN+FLAG R DID+FL 
Sbjct: 5   SSFVNIAAYKFITFDDTAEKRPEFLAKCNELSLKGTILLTPEGINMFLAGTRADIDSFLA 64

Query: 66  WLRADARFTDLIVKESYSEKQPFTRMLVKLKAEIITMKHPLIKPELGRAPFVEPRELKRW 125
           W+RADARF+DL VKES+S+ QPF  MLVKLK EIITMKHPLIKPE GRAP V P  LKRW
Sbjct: 65  WVRADARFSDLEVKESFSDDQPFKYMLVKLKREIITMKHPLIKPEEGRAPVVTPTTLKRW 124

Query: 126 LDQGHDDEGRPVVMVDTRNGFEVDVGTFDNTVDYRISKFTEFPKVIEDHKADFEGKTVVT 185
           LDQGHDD+G+PVVM++TRN FEVDVGTFDNT+DYRI KF++FP V+  HK +   KTVVT
Sbjct: 125 LDQGHDDDGKPVVMMETRNAFEVDVGTFDNTLDYRIEKFSDFPDVVAQHKDELADKTVVT 184

Query: 186 FCTGGIRCEKAAIHMQNIGYDHVYQLEGGILKYFEDVGGAHYNGDCFVFDYRTALSPELK 245
           FCTGGIRCEKAAIHM+N+GYD VYQL+GGILKYFE+VGGAHY GDCFVFD+RTAL+P L+
Sbjct: 185 FCTGGIRCEKAAIHMKNVGYDSVYQLDGGILKYFEEVGGAHYTGDCFVFDHRTALNPRLE 244

Query: 246 ETQTAQCFACRAVVTPREQLSPDYVPGKSCPHCA 279
            +    C +C A VTPREQL+P++V G +CPHCA
Sbjct: 245 PSLATTCPSCNATVTPREQLAPEFVEGGTCPHCA 278


>gi|152981000|ref|YP_001355200.1| hypothetical protein mma_3510
           [Janthinobacterium sp. Marseille]
          Length = 278

 Score =  155 bits (391), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 99/256 (38%), Positives = 141/256 (55%), Gaps = 21/256 (8%)

Query: 4   PDTPYVNIAAYKFVSFDDTVEKRPVFLEFCRQ--HNLRGTVILSPEGINLFLAGLRQDID 61
           P T   +IA YKF    D        +  CR+   +L G+++++ EGIN  LAG    +D
Sbjct: 7   PGTEQFHIAFYKFAKLADA----DAVVTVCRELTQDLLGSILIAEEGINGVLAGDAVALD 62

Query: 62  AFLNWLRADAR----FTDLIVKESYSEKQPFTRMLVKLKAEIITMKHPLIKPELGRAPFV 117
            F   LR D R    F++++ K S  +  PF RM V  K+EI+ +    +         V
Sbjct: 63  RFEQALRTDPRLAGAFSNIVFKRSACKTAPFARMKVHRKSEIVFLGVDNVDAIGKTGIDV 122

Query: 118 EPRELKRWLDQGHDDEGRPVVMVDTRNGFEVDVGTFDNTVDYRISKFTEFPKVIEDHKAD 177
            P+E +  + Q  DD    VV++D RN FE  +G F N VD  +  F +FPK IE+H  +
Sbjct: 123 SPQEWRELIAQ--DD----VVVIDNRNSFEFKLGKFKNAVDPGVDNFRDFPKYIEEHVPE 176

Query: 178 FE--GKTVVTFCTGGIRCEKAAIHMQNIGYDHVYQLEGGILKYFEDVGGAH--YNGDCFV 233
           ++  GK V  +CTGGIRCEK +  M ++G   VYQLEGGIL YF ++  A   + G+CFV
Sbjct: 177 WQASGKRVAMYCTGGIRCEKTSAWMLDMGV-PVYQLEGGILNYFLEMPDAEKDWEGECFV 235

Query: 234 FDYRTALSPELKETQT 249
           FD R AL  +++ET T
Sbjct: 236 FDNRIALDTKMRETDT 251


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.138    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 698,871
Number of extensions: 29135
Number of successful extensions: 73
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 2
Length of query: 293
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 211
Effective length of database: 917,867
Effective search space: 193669937
Effective search space used: 193669937
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)