BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3477.p (1152 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980633|ref|YP_001352224.1| DNA polymerase III alpha subuni... 1846 0.0 gi|152980588|ref|YP_001353603.1| DNA polymerase III alpha subuni... 371 e-103 >gi|152980633|ref|YP_001352224.1| DNA polymerase III alpha subunit [Janthinobacterium sp. Marseille] Length = 1152 Score = 1846 bits (4782), Expect = 0.0, Method: Compositional matrix adjust. Identities = 884/1152 (76%), Positives = 1007/1152 (87%), Gaps = 1/1152 (0%) Query: 1 MTTPQFVHLRMHSEYSIVDGLVRIDDIVKAAAKDGQAALAVTDLANLFCMVRFYKEARGK 60 M +PQF+HLR+HSEYSIVDGL+RIDD+++AAA D Q ALA++DLANLF MV+FYKEAR Sbjct: 1 MISPQFIHLRLHSEYSIVDGLIRIDDVIQAAAADMQPALAISDLANLFGMVKFYKEARSN 60 Query: 61 GVKPIAGCDLWITNDADREKPFRLLVLIKNRHGYLQLCEVLSQAWLNNQYKGRAEVRMEW 120 G+KPI GCD+WI+ND DR+KP RLL+L+KN+ GYLQLCE+LS+AWL N ++GRAE+R EW Sbjct: 61 GIKPIVGCDVWISNDNDRDKPSRLLLLVKNKDGYLQLCELLSKAWLTNLHRGRAEIRPEW 120 Query: 121 LEALRHQEGGNGLIALSGAAMGDIGQAIDNGNLTQAEACARRWAEIFPGAFYLELQRAGQ 180 LE + +G NGLI LSGA GD+G AIDNGNL AE CA+RWAE+FPG FY+E+QRAGQ Sbjct: 121 LEQV-AADGKNGLIVLSGAHFGDVGIAIDNGNLGAAERCAQRWAELFPGHFYIEVQRAGQ 179 Query: 181 ANMELQVRQSVALGAKLGLPCVATHPIQFQSPEEFIAHEARTCIAEGEIMANARRVRRFN 240 NM+ VRQ+ L AKLGLP VATHP+QF EEF AHEARTCI+EGEI+AN RR++RFN Sbjct: 180 PNMDGHVRQASVLAAKLGLPLVATHPVQFLGLEEFTAHEARTCISEGEILANPRRIKRFN 239 Query: 241 EQQYFKSQAEMAELFADLPGALANSVEIAKRCNLVLQLGKPQLPDFPTPDGMSIDDFLVA 300 EQQ FK+QAEMAELFAD+P AL NSVEIAKRCNLVL+LGKP+LP+FPTPDG SID+FLV Sbjct: 240 EQQRFKTQAEMAELFADMPNALQNSVEIAKRCNLVLELGKPKLPNFPTPDGSSIDEFLVK 299 Query: 301 QTKAGLEVRLKELFPNEAEREKQRPRYEARLEFENNTIIKMKFPGYFLIVADFIQWAKNN 360 + + GL+ R++ L+P+ A REK R RY+ARL+FE +TIIKM FPGYFLIVADFI+WAKNN Sbjct: 300 EAQRGLDQRMEHLYPDPAAREKHRERYQARLKFETDTIIKMGFPGYFLIVADFIKWAKNN 359 Query: 361 GVPVGPGRGSGAGSLVAYCLLITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQEGRDRV 420 GVPVGPGRGSGAGSLVAY LLITDLDPL+YNLLFERFLNPERVSMPDFDIDFCQEGRDRV Sbjct: 360 GVPVGPGRGSGAGSLVAYSLLITDLDPLQYNLLFERFLNPERVSMPDFDIDFCQEGRDRV 419 Query: 421 IQYVKDRYGKDAVSQIATFGTMAAKGAVRDVGRVLDLGYNFCDGISKLIPFKPGKLVTLA 480 IQYVKD+YGKDAVSQIATFGTMAAKGAVRDVGRVLD GYNFCDGISKLIPFKPGKLVT++ Sbjct: 420 IQYVKDQYGKDAVSQIATFGTMAAKGAVRDVGRVLDFGYNFCDGISKLIPFKPGKLVTIS 479 Query: 481 DAIEEEPLLKERLENEEEVKQLMGLAQQVEGIARNIGMHAGGVLIAPGKLTDFCPLYTQG 540 DAI+EEPLL ERLENEEEVKQL+ LAQQVEGIARNIGMHAGGVLIAPGKLTDFCPLYTQG Sbjct: 480 DAIKEEPLLAERLENEEEVKQLLDLAQQVEGIARNIGMHAGGVLIAPGKLTDFCPLYTQG 539 Query: 541 GDSGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDRAVRYIRMLDPAMADFDLAKLPLDDR 600 GD+GVVSQYDKDDVEAVGLVKFDFLGLTTLTILDRAVRYI+ LDPAMADF L KLPL+DR Sbjct: 540 GDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDRAVRYIKDLDPAMADFALEKLPLNDR 599 Query: 601 PSYELLTKAKTVAVFQLESRGMQGMLKDARPDRFEDIIALVALYRPGPMDLIPDFCKRKH 660 PSYELLTKAKTVAVFQLESRGMQGMLKDARPDRFEDIIALVALYRPGPMDLIPDFC+RKH Sbjct: 600 PSYELLTKAKTVAVFQLESRGMQGMLKDARPDRFEDIIALVALYRPGPMDLIPDFCRRKH 659 Query: 661 GEAFDYPDPRTEGILSETYGIMVYQEQVMQMAQVIGGYSLGGADLLRRAMGKKKAEEMAK 720 GE F+YPDPRTE ILSETYGIMVYQEQVMQMAQVIGGYSLGGADLLRRAMGKKKAEEMA+ Sbjct: 660 GERFEYPDPRTESILSETYGIMVYQEQVMQMAQVIGGYSLGGADLLRRAMGKKKAEEMAE 719 Query: 721 HRELFREGAAKNGLDQAKADEIFDLMEKFAGYGFNKSHAAAYALLSYYTAYLKAHHPAAF 780 HRELFR GA+KN L KADEIFDLMEKFAGYGFNKSHAAAYALLSY+TAYLKAHHPAAF Sbjct: 720 HRELFRAGASKNDLSAEKADEIFDLMEKFAGYGFNKSHAAAYALLSYHTAYLKAHHPAAF 779 Query: 781 MAANLSLAMEDTDKVKILIEDSIDICKLAILPPDINKSDYRFMPVGEPGKKATQIRYGLG 840 MAANLSLAM+DTDK+KIL+ED+IDIC L++LPPDIN+SDYRF PVG PGKKATQIRYGLG Sbjct: 780 MAANLSLAMDDTDKIKILVEDAIDICGLSLLPPDINQSDYRFTPVGVPGKKATQIRYGLG 839 Query: 841 AVKGAGQNAIEAILEARKSGPFKDLFDFAKRVDKKQINRRTIDSLIRAGAFDCFKVDRAI 900 AVKG+G+ AI+A++EARK PF DLFDFAKRVDK+QINRRTIDSLIRAGAFDCF VDRAI Sbjct: 840 AVKGSGKGAIDAVIEARKERPFTDLFDFAKRVDKRQINRRTIDSLIRAGAFDCFDVDRAI 899 Query: 901 LQASVNLAWESAEQAEKSANQVSLFGGDDSDLEAPLEYVQVPPWSDKQRLTEEKGALGFY 960 L ASV A E AEQAE +ANQVSLFGGDDSDLE P EYV+V PWSDKQ+LTEEK ALGFY Sbjct: 900 LLASVAFAMECAEQAEAAANQVSLFGGDDSDLETPPEYVKVSPWSDKQKLTEEKAALGFY 959 Query: 961 LSGHLFSAYEKEVRRFVRTKIASLEPSWEPRSLAGIITGVRVQMTQRGKLVICTLDDGTG 1020 LSGHLF+AY E RRF R K++SLEPS EPR++AG+I+G+R QMTQRG++ I TLDDG+ Sbjct: 960 LSGHLFNAYADEARRFARAKLSSLEPSREPRTIAGVISGLRTQMTQRGRITIVTLDDGSA 1019 Query: 1021 VIEATIYNELFEPFKHLIKEDELLVVSGKVSEDRFNGGLRVAADKVMDLGAARIQYGVRM 1080 ++ T+YNEL++ +H+ KEDE L V+GKVSEDRF+GGLR+ A+KVMD+ RIQY + Sbjct: 1020 TVDVTVYNELYDANRHMFKEDEFLAVTGKVSEDRFSGGLRITAEKVMDIAGVRIQYANCV 1079 Query: 1081 VVSINKAIDPNHLRDTLSAHRQEQGLPFVMRYQQADAACEVVLGDAWRINPSDSLQSTLV 1140 +S+ + D N L+ TL + G P V++YQ E+ + WRINP D+++ L+ Sbjct: 1080 RLSLPASTDINVLKATLQPAARADGSPVVIQYQNPKGVSELCFAEQWRINPDDNIKQKLI 1139 Query: 1141 ASFGKEAVVVEY 1152 + + V + Y Sbjct: 1140 DLYSDKNVQIAY 1151 >gi|152980588|ref|YP_001353603.1| DNA polymerase III alpha subunit [Janthinobacterium sp. Marseille] Length = 1041 Score = 371 bits (952), Expect = e-103, Method: Compositional matrix adjust. Identities = 307/1064 (28%), Positives = 511/1064 (48%), Gaps = 81/1064 (7%) Query: 4 PQFVHLRMHSEYSIVDGLVRIDDIVKAAAKDGQAALAVTDLANLFCMVRFYKEARGKGVK 63 P + L S +S + G +++V+ A G ++LA+TD +L +VR + EA+ + + Sbjct: 6 PSYAELHCRSNFSFLHGASHPEELVERACDLGYSSLAITDECSLAGVVRAHVEAKKRQLH 65 Query: 64 PIAGCDLWITNDADREKPFRLLVLIKNRHGYLQLCEVLSQAWLNNQYKGRAEVRMEWLEA 123 I G ++ + + +LL L NR+GY L E+++ A KG + L+A Sbjct: 66 LIIGSEIKLACGS------KLLFLACNRNGYGNLSELITLA-RRRAAKGSYTLYRSDLDA 118 Query: 124 ------LRH-QEGGNGLIALSGAAMGDI-GQAIDNGNLTQAEACARRW-AEIFPGAFYLE 174 LRH + L+ G + ++ GQA W + F G ++ Sbjct: 119 HAAIAHLRHLPDCLTILLPQRGCSAVELAGQAA--------------WLQQNFAGRAWIA 164 Query: 175 LQRAGQANMELQVRQSVALGAKLGLPCVATHPIQFQSPEEFIAHEARTCIAEGEIMANAR 234 ++ + E + Q + A+ LP VA + + T + G+ +A Sbjct: 165 VELLHWSGDEHWLAQLKEIAAQQALPLVAMGDVLMHVRSRKPLQDTLTAVRLGKSIAECG 224 Query: 235 RVRRFNEQQYFKSQAEMAELFADLPGAL-ANSVEIAKRCNLVLQLGKPQLPDFPTPDGMS 293 + N +Q+ +S+ +++++ P AL S+EIA C L+ + Q P+ P G + Sbjct: 225 LDLQPNAEQHLRSRLRLSQIY---PAALLKESLEIAALCTFSLEELRYQYPEEIVPAGET 281 Query: 294 IDDFLVAQTKAG-LEVRLKELFPNEAEREKQRPRYEARLEFENNTIIKMKFPGYFLIVAD 352 + +L G + R K P E + R+E E + I ++ + YFL V D Sbjct: 282 MSAYLRRLVYEGATQRRYKNGIPEE---------FHVRIEHELSLIQELHYEPYFLTVYD 332 Query: 353 FIQWAKNNGVPVGPGRGSGAGSLVAYCLLITDLDPLRYNLLFERFLNPERVSMPDFDIDF 412 +++A++ G+ + GRGS A S+V YCL IT++DP R ++LFERF++ ER PD D+DF Sbjct: 333 IVKFARSEGI-LCQGRGSAANSIVCYCLGITEVDPARSSVLFERFISRERNEPPDIDVDF 391 Query: 413 CQEGRDRVIQYVKDRYGKDAVSQIATFGTMAAKGAVRDVGRVLDLGYNFCDGISKLIPFK 472 + R+ V+QY+ +YG+ + A T + A++DVG+ L L + + +S+ + Sbjct: 392 EHQRREEVMQYIYQKYGRHRAALTAALITYRPRSAMKDVGKALGLDFEQINRLSQSHKWW 451 Query: 473 PGKLVTLADAIEEEPLLKERLENEEEVKQLMGLAQQVEGIARNIGMHAGGVLIAPGKLTD 532 GK + AD ++E E V++L+ L Q + G R++ H GG +I+ L Sbjct: 452 DGKQIG-ADRLQENGFDPE----SPIVQKLVELTQTLIGFPRHLSQHTGGFVISQDSLAR 506 Query: 533 FCPLYTQGGDSGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDRAVRYIRMLDPAMADFDL 592 P+ V ++DKDD++A+GL+K D L L L+ + RA+ I + DF+L Sbjct: 507 LVPIENASMKDRSVIEWDKDDLDALGLLKVDVLALGMLSAIRRALEMISLRRG--HDFEL 564 Query: 593 AKLPLDDRPSYELLTKAKTVAVFQLESRGMQGMLKDARPDRFEDIIALVALYRPGPMD-- 650 + DD +YE++ A T+ VFQ+ESR ML RP + D++ VA+ RPGP+ Sbjct: 565 QDIHDDDAATYEMICAADTIGVFQIESRAQMSMLPRLRPKCYYDLVIQVAIVRPGPIQGG 624 Query: 651 LIPDFCKRKHGEAFD--YPDPRTEGILSETYGIMVYQEQVMQMAQVIGGYSLGGADLLRR 708 ++ + K + D YP E LS T G+ ++QEQVMQ+A + GY+ G AD LRR Sbjct: 625 MVHPYLKNRRMNKDDIIYPGDEIEEALSRTCGVPIFQEQVMQIAVLAAGYTAGEADDLRR 684 Query: 709 AMGK-KKAEEMAKHRELFREGAAKNGLDQAKADEIFDLMEKFAGYGFNKSHAAAYALLSY 767 +M K+ + KH + G NG D AD +F+ ++ F YGF +SHAA++ALL Y Sbjct: 685 SMAAWKRKGNLEKHEIKLKTGLINNGYDPGFADRLFEQIKGFGEYGFPESHAASFALLVY 744 Query: 768 YTAYLKAHHPAAFMAANLSLAMEDTDKVKILIEDSIDICKLAILPPDINKSDYRFMPVGE 827 +A++K H PAAF+AA L+ L++D+ + + P DI S+ + + Sbjct: 745 VSAWIKRHEPAAFLAALLNSQPMGFYSASQLVQDA-KRHGVPVRPVDIMLSETEST-MED 802 Query: 828 PGKKATQIRYGLGAVKGAGQNAIEAILEARKSGPFKDLFDFAKRVDKKQINRRTIDSLIR 887 + +R GL VKG +A E I++AR PF D A+R Q + Sbjct: 803 MHAQYPAVRLGLHMVKGLSTDAAERIIDARLRRPFASTDDLARRAVLDQHELGALARANA 862 Query: 888 AGAFDCFKVDRAILQASVNLAWESAEQAEKSANQVSLFGGDDSDLEAPLEYVQVPPWSDK 947 A + QA WE A A D +EAP V +PP S+ Sbjct: 863 LLALTGHR-----RQAK----WEVAAMLPPPA-----LLRDAPIIEAP---VILPPASEG 905 Query: 948 QRLTEEKGALGFYLSGHLFSAYEKEVRRFVRTKIASLEPSWEPRSLA---GIITGVRVQM 1004 Q + + + G L H + +++ + ++ + R LA GI+T + Sbjct: 906 QEIIADYASTGLTLQRHPLALLRPRLKQMNLSTALEMK-GFADRKLARTTGIVTMRQRPP 964 Query: 1005 TQRGKLVICTLDDGTGVIEATIYNELFEPFKHLIKEDELLVVSG 1048 T +G + + TL+D TG+ I+ +L + + I +L+ V G Sbjct: 965 TAKGTMFV-TLEDETGITNVIIWPDLIDKQRKEILNAQLMTVYG 1007 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.138 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 2,620,786 Number of extensions: 110429 Number of successful extensions: 328 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 318 Number of HSP's successfully gapped: 2 Length of query: 1152 Length of database: 1,221,021 Length adjustment: 94 Effective length of query: 1058 Effective length of database: 873,503 Effective search space: 924166174 Effective search space used: 924166174 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 135 (56.6 bits)