BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3472.p (580 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982174|ref|YP_001352225.1| ABC-type multidrug transport sy... 833 0.0 gi|152981213|ref|YP_001352884.1| ABC-type multidrug transport sy... 300 1e-82 gi|152981048|ref|YP_001355244.1| ABC-type multidrug transport sy... 284 1e-77 gi|152981278|ref|YP_001351967.1| ABC-type transport system invol... 274 1e-74 gi|152982656|ref|YP_001351943.1| ABC-type multidrug transport sy... 242 4e-65 >gi|152982174|ref|YP_001352225.1| ABC-type multidrug transport system, ATPase and permease components [Janthinobacterium sp. Marseille] Length = 578 Score = 833 bits (2153), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/575 (70%), Positives = 490/575 (85%) Query: 1 MLSNNMKRLAALHWPYKKRLSLAFIAMIVTAATEPVVPYIFQVLLDKGFVGKPAFSLWLV 60 ++S ++KRL + PYKKRL++A + MI+TA TEP+ P + +VLLDKGF GKP+FSLWLV Sbjct: 2 IVSPHLKRLFGMLAPYKKRLAVALLGMIMTALTEPMFPAVMRVLLDKGFGGKPSFSLWLV 61 Query: 61 PAAVIGIFFIRGIATFTSSYMMTWVSTRILNELRRQMFARMLDLPLHFYATNTVGKVINS 120 P A++GIF +RGI+TFT++YMMTWVS+R+L LR+QMF RMLD+PL FYAT++VG+VINS Sbjct: 62 PVAIVGIFVLRGISTFTTTYMMTWVSSRLLTTLRKQMFERMLDVPLGFYATHSVGRVINS 121 Query: 121 MMFEVQQIIDMVTKVFTSILRSALTVLGLLAWLLYLNWVLTIVTLVLLPLVTLVVRTTGK 180 MMFEVQQII+M+TKV+TSI+R +LTV+ LL++L +LNW LT+V LVLLPL+ +VVR TG+ Sbjct: 122 MMFEVQQIIEMITKVYTSIIRDSLTVIVLLSFLFWLNWRLTLVALVLLPLIAIVVRATGR 181 Query: 181 RLKKLNRDSLAVNAEMTQVIEETTRAQQVIKIFGGQDYEKERFNRRAENLRSYTMRMTAA 240 RL++L R+ VN EMTQVIEETTRA QVIKIFGG YE+ERF RA+ LR YTMRM A Sbjct: 182 RLRRLTREYQTVNGEMTQVIEETTRANQVIKIFGGHRYEEERFEVRADKLRGYTMRMATA 241 Query: 241 FSSTVPITQLMTATAVAVVIVMALIQSGNGQITVGGFVSFITAMLMLLTPLKQLAEINGP 300 ++T P+TQ+M +TAVA+VIV+ALIQSG Q TVGGFVSFITAMLMLLTPLK +AE+NGP Sbjct: 242 MAATTPVTQVMASTAVAIVIVIALIQSGQNQTTVGGFVSFITAMLMLLTPLKNIAEVNGP 301 Query: 301 LQRGMAAAEEVYKLIDKTTERTTGQALSGRATGRLDFVEVGFTYPGHEQLALKNINLHVE 360 LQRG+ AAE V+KLID ERT G+ L+ RA GRLDFV +GFTYPG + +AL++INL V+ Sbjct: 302 LQRGLTAAEAVFKLIDAEPERTNGKDLAARAAGRLDFVRLGFTYPGQQTMALQDINLSVQ 361 Query: 361 AGETIAFVGMSGGGKSTLVSLIPGFYSCTAGEIRLDGRDIETISLESLRRQIAMVNQNTV 420 GETIAFVGMSGGGKSTLV+L+PGFYS TAGEI+LDG IE ISL SLR+QIAMV+Q+ V Sbjct: 362 PGETIAFVGMSGGGKSTLVNLVPGFYSATAGEIQLDGVSIEEISLSSLRKQIAMVSQHVV 421 Query: 421 LFDDTLAANIAYGDATPDPARIEAAVEAAHLGDVVAGLAEGLQTRLGDNGSRLSGGQRQR 480 LFDDT+AANIAYGDA PD RI AA AAHL +V+AGL EGL+T +GDNGSRLSGGQRQR Sbjct: 422 LFDDTIAANIAYGDANPDRTRIMAAAHAAHLDEVIAGLPEGLETMIGDNGSRLSGGQRQR 481 Query: 481 VAIARAIYKDAPILILDEATSALDTESERAVQAALERLMQGRTTFVIAHRLSTIERADRI 540 +AIARAIYKDAPILILDEATSALD+ESERAVQAAL+ LM+GRTT VIAHRLSTIERADRI Sbjct: 482 LAIARAIYKDAPILILDEATSALDSESERAVQAALDELMKGRTTLVIAHRLSTIERADRI 541 Query: 541 VVLAHGQIAEIGTHQELLQKEGVYANLYRLQFSQQ 575 VLA G I E+G+HQELL + GVYANLY LQF++ Sbjct: 542 AVLAEGHIVELGSHQELLARNGVYANLYHLQFAKD 576 >gi|152981213|ref|YP_001352884.1| ABC-type multidrug transport system, ATPase and permease components [Janthinobacterium sp. Marseille] Length = 595 Score = 300 bits (769), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 208/576 (36%), Positives = 312/576 (54%), Gaps = 21/576 (3%) Query: 15 PYKKRLSLAFIAMIVTAATEPVVPYIFQVLLDKGFVGK-----PAFSLWLVPAAVIGIFF 69 PYKK+ LA IA+IV AA +PY F+ ++D GF + + + + A+ G+ Sbjct: 26 PYKKQFVLAGIALIVAAAATLAIPYAFRQMIDLGFGANGMHDTSSINTYFI--ALFGVAC 83 Query: 70 IRGIATFTSSYMMTWVSTRILNELRRQMFARMLDLPLHFYATNTVGKVINSMMFEVQQII 129 + IAT YM++W+ R+ ++R +++ ++ F+ T G+V++ + + I Sbjct: 84 VLAIATAARFYMVSWLGERVTADVRNAVYSHVVTQSPQFFETTQSGEVLSRITTDTTLIQ 143 Query: 130 DMVTKVFTSILRSALTVLGLLAWLLYLNWVLTIVTLVLLPLVTLVVRTTGKRLKKLNRDS 189 ++ + LR+AL G L L + + L+ + LV L V L + G+R++ L+RDS Sbjct: 144 TLIGTSISMALRNALLFAGGLVMLFFTSIKLSSIILVTLAFVVLPIVWFGRRVRTLSRDS 203 Query: 190 LAVNAEMTQVIEETTRAQQVIKIFGGQDYEKERFNRRAENLRSYTMRMTAAFSSTVPITQ 249 A+ + + E A ++ + + E +RF + EN MR A S I Sbjct: 204 QDRVADASALAGEILNAMPTVQAYTHEKIEAKRFGQTVENAFKTAMRRIRARSLLTMIAI 263 Query: 250 LMTATAVAVVIVMALIQSGNGQITVGGFVSFITAMLMLLTPLKQLAEINGPLQRGMAAAE 309 L+ A+ V+ + +G ++ G FI ++ + L+E+ G QR A E Sbjct: 264 LLVFGAIVFVLWLGAHAVIDGSMSGGQLGQFILYSAIVAGAIGALSEVLGDAQRAAGATE 323 Query: 310 EVYKLID-------KTTERTTGQALSGRATGRLDFVEVGFTYPGHE-QLALKNINLHVEA 361 + +L+ T R+ + A LD V F YP AL N+++ ++A Sbjct: 324 RLLELLSVQSPISSPATPRSLPPRRANGAALTLDLVT--FHYPSRPLTPALSNLSVSIQA 381 Query: 362 GETIAFVGMSGGGKSTLVSLIPGFYSCTAGEIRLDGRDIETISLESLRRQIAMVNQNTVL 421 GET+A VG SG GK++L L+ FY G I LDG DI + L +LR I +V Q+TV+ Sbjct: 382 GETVAIVGPSGAGKTSLFQLLLRFYDPQEGVIELDGIDIRELDLHALRNTIGIVPQDTVI 441 Query: 422 FDDTLAANIAYG--DATPDPARIEAAVEAAHLGDVVAGLAEGLQTRLGDNGSRLSGGQRQ 479 F NI YG +AT + A + AAH + + L EG + LG+ G RLSGGQRQ Sbjct: 442 FSANAMENIRYGRPEATDEEVIAAARLAAAH--EFIERLPEGYLSFLGERGVRLSGGQRQ 499 Query: 480 RVAIARAIYKDAPILILDEATSALDTESERAVQAALERLMQGRTTFVIAHRLSTIERADR 539 R+AIARA+ K+ P+L+LDEATSALD ESER VQ ALE M GRTT VIAHRL+T++RADR Sbjct: 500 RIAIARALLKNPPLLLLDEATSALDAESERLVQGALEAAMVGRTTLVIAHRLATVQRADR 559 Query: 540 IVVLAHGQIAEIGTHQELLQKEGVYANLYRLQFSQQ 575 I+V+ HG+I E GTH L+ G+YA+L LQF Q Sbjct: 560 IIVMEHGKIVETGTHASLVAAGGLYASLAALQFGQH 595 >gi|152981048|ref|YP_001355244.1| ABC-type multidrug transport system, ATPase and permease components [Janthinobacterium sp. Marseille] Length = 705 Score = 284 bits (726), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 194/582 (33%), Positives = 303/582 (52%), Gaps = 18/582 (3%) Query: 8 RLAALHWPYKKRLSLAFIAMIVTAATEPVVPYIFQVLLDKGFV----GKPAFSLWLVPAA 63 RL PY+ +L L F+ + + A V PY+ L+D + G P LV Sbjct: 118 RLWRFAKPYRGQLLLGFLLTLASTAATLVPPYMTMPLMDNVLIPYQNGVP-IDKGLVALY 176 Query: 64 VIGIF----FIRGIATFTSSYMMTWVSTRILNELRRQMFARMLDLPLHFYATNTVGKVIN 119 + G+F F G+ + +Y++ VS RI +LR + +L L L ++ G ++ Sbjct: 177 LGGLFGSALFAWGLG-WARTYILALVSERIGADLRTTTYEHLLRLSLEYFGGKRTGDLMT 235 Query: 120 SMMFEVQQIIDMVTKVFTSILRSALTVLGLLAWLLYLNWVLTIVTLVLLPLVTLVVRTTG 179 + E +I ++ L ++ A L+ +N L +VTL+ LP + ++ Sbjct: 236 RIGSETDRICVFLSLHLLDFFTDVLMIMMTAAILISINPWLALVTLLPLPFIAWMIHVVR 295 Query: 180 KRLKKLNRDSLAVNAEMTQVIEETTRAQQVIKIFGGQDYEKERFNRRAENLRSYTMRMTA 239 +L+ + +++T V+ +T +V+K F + E RF + R+ Sbjct: 296 DKLRNGFEKVDRIWSQVTNVLADTIPGIRVVKAFAQEKREAARFREANNHNLVVNDRVNK 355 Query: 240 AFSSTVPITQLMTATAVAVVIVMALIQSGNGQITVGGFVSFITAMLMLLTPLKQLAEING 299 +S P +T + VV + + Q G ITVG +F+ + T L ++ I Sbjct: 356 VWSLFSPTVTFLTEIGLLVVWALGIWQVSQGMITVGVLTAFLAYISRFYTRLDSMSRIVS 415 Query: 300 PLQRGMAAAEEVYKLIDKTTE--RTTGQALSGRATGRLDFVEVGFTYPGHEQLALKNINL 357 Q+ A+ ++ ++D + T + G++ ++GF Y + ++ ++L Sbjct: 416 VTQKAATGAKRIFDILDHVSSVPEATNPVHLDKVQGKITIKDIGFRY--GNRAVIRGLDL 473 Query: 358 HVEAGETIAFVGMSGGGKSTLVSLIPGFYSCTAGEIRLDGRDIETISLESLRRQIAMVNQ 417 + GE I VG SG GKSTLV+LI FY +AG I +DG D+ +I + RR I +V Q Sbjct: 474 TINPGEMIGLVGHSGSGKSTLVNLICRFYDVSAGAIMVDGVDVRSIPIPEYRRNIGLVLQ 533 Query: 418 NTVLFDDTLAANIAYGDATPDPAR--IEAAVEAAHLGDVVAGLAEGLQTRLGDNGSRLSG 475 LF T+A NIAYG PD +R I AA AAH + + L G + +G+ G LSG Sbjct: 534 EPFLFFGTIADNIAYG--KPDASREDIIAAARAAHAHEFILRLPHGYDSMVGERGQTLSG 591 Query: 476 GQRQRVAIARAIYKDAPILILDEATSALDTESERAVQAALERLMQGRTTFVIAHRLSTIE 535 G+RQR++IARA+ D ILILDEATS++DT +ER +Q AL+ L++GRTT IAHRLST+ Sbjct: 592 GERQRISIARALLIDPHILILDEATSSVDTTTEREIQKALDNLVRGRTTIAIAHRLSTLR 651 Query: 536 RADRIVVLAHGQIAEIGTHQELLQKEGVYANLYRLQFSQQKE 577 RADRIVV+ GQI E+G+H ELLQ+EG Y LY+ Q Q ++ Sbjct: 652 RADRIVVMDRGQIVEVGSHDELLQREGAYYKLYQAQQRQAED 693 >gi|152981278|ref|YP_001351967.1| ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Janthinobacterium sp. Marseille] Length = 630 Score = 274 bits (700), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 198/604 (32%), Positives = 310/604 (51%), Gaps = 51/604 (8%) Query: 4 NNMKRLAALHWPYKKRLSLAFIAMIVTAATEPVVPYIFQVLLDKGFVGKPAFSLWLVPAA 63 + +K L W YK R+ LA +I VP + + L+D SL + P + Sbjct: 21 STLKTLIPYLWTYKWRVGLALAFLIAAKMANVGVPLVLKRLID---------SLTITPGS 71 Query: 64 V-------IGIFFIRGIATFTSS-------YMMTWVSTRILNELRRQMFARMLDLPLHFY 109 +GI G +++ Y V+ R + + ++F + L L F+ Sbjct: 72 TQAMLVLPLGILIAYGALRLSTTLFTELREYTFAKVTQRAVRTIALKVFRHLHSLSLRFH 131 Query: 110 ATNTVGKVINSMMFEVQQIIDMVTKVFTSILRSALTVLGLLAWLL--YLNWVLTIVTLVL 167 G + + + I +++ SIL + + ++ +L +L+ Y W I + L Sbjct: 132 LNRQTGGMTRDIERGTKGISSLISYTLFSILPTLIEIVLVLGYLVLHYDIWFTVITGVAL 191 Query: 168 LPLVTLVVRTTGKRL---KKLNR-DSLAVNAEMTQVIEETTRAQQVIKIFGGQDYEKERF 223 + + V T R + +N DS A + +I T +K FG +DYE R+ Sbjct: 192 VSYIAFTVIVTEWRTHFRRTMNDLDSKANTKAIDSLINYET-----VKYFGNEDYEARRY 246 Query: 224 NRRAENLRSYTMRMTAAFSSTVPITQLMTAT----AVAVVIVMALIQSG--NGQITVGGF 277 + E L+ Y TAA S ++ L T A+AV +++ G +G +T+G Sbjct: 247 D---EGLKRYE---TAAVKSQTSLSLLNTGQSSIIAIAVTLILWRATQGVISGTMTLGDL 300 Query: 278 VSFITAMLMLLTPLKQLAEINGPLQRGMAAAEEVYKLIDKTTE---RTTGQALSGRATGR 334 V M+ L PL L I +++ +A E ++ L+D+ E + QAL Sbjct: 301 VLVNAFMIQLYIPLNFLGVIYREIKQSLADMERLFSLLDQNREIADKPDTQALVTDG-AE 359 Query: 335 LDFVEVGFTYPGHEQLALKNINLHVEAGETIAFVGMSGGGKSTLVSLIPGFYSCTAGEIR 394 + F V F+Y + Q+ L +++ + AG T A VG SG GKSTL L+ FY G I Sbjct: 360 VRFSHVDFSYEANRQI-LFDVDFTIAAGTTTAVVGHSGSGKSTLSRLLFRFYDVNQGAIL 418 Query: 395 LDGRDIETISLESLRRQIAMVNQNTVLFDDTLAANIAYGDATPDPARIEAAVEAAHLGDV 454 +DG+D+ ++ SLR+ I +V Q+TVLF+DT+A NIAYG A I AA ++A++ + Sbjct: 419 IDGQDVRDVTQTSLRQAIGIVPQDTVLFNDTIAYNIAYGKPGASHADIVAAAQSAYIHEF 478 Query: 455 VAGLAEGLQTRLGDNGSRLSGGQRQRVAIARAIYKDAPILILDEATSALDTESERAVQAA 514 + L +G T +G+ G +LSGG++QRVAIAR + K ILI DEATSALD++SE+A+QA Sbjct: 479 IESLPDGYNTMVGERGLKLSGGEKQRVAIARTLLKHPAILIFDEATSALDSKSEQAIQAQ 538 Query: 515 LERLMQGRTTFVIAHRLSTIERADRIVVLAHGQIAEIGTHQELLQKEGVYANLYRLQFSQ 574 L+ + Q RTT +IAHRLSTI A +I+VL G+I E GTH +LL EG YA ++ Q ++ Sbjct: 539 LKEIAQNRTTLIIAHRLSTIADAAQILVLDKGRIIERGTHMQLLASEGAYAQMWMRQQAR 598 Query: 575 QKEA 578 +A Sbjct: 599 PDDA 602 >gi|152982656|ref|YP_001351943.1| ABC-type multidrug transport system, ATPase and permease components [Janthinobacterium sp. Marseille] Length = 658 Score = 242 bits (618), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 160/522 (30%), Positives = 277/522 (53%), Gaps = 10/522 (1%) Query: 64 VIGIFFIRGIATFTSSYMMTWVSTRILNELRRQMFARMLDLPLHFYATNTVGKVINSMMF 123 ++ + +RGI T Y+ ++ ++ +LR + ++ L ++ G +I M Sbjct: 119 IVLVCAVRGILTGLQGYLGETLAQKVGYDLRMAFYEKLQRLSFSYHDKIHTGDLIARGML 178 Query: 124 EVQQIIDMVTKVFTSILRSALTVLGLLAW-LLYLNWVLTIVTLVLLPLVTLVVRTTGKRL 182 +++ + + + + + +LG+ +W LL ++ L ++ L +P V TG RL Sbjct: 179 DLEGVRAFL-EFGVLRIITLTLLLGVGSWRLLSIDVTLGLLALSFVPFVAWNAARTGLRL 237 Query: 183 KKLNRDSLAVNAEMTQVIEETTRAQQVIKIFGGQDYEKERFNRRAE-NLRSYTMRMTAAF 241 + + + +EMT +EE + +V++ F + +E +F++ ++ LR R+T Sbjct: 238 RVSWQRLQKMMSEMTLNMEENLQGVRVVRAFTSRLHEMSKFDKISDVALRLSNQRITERM 297 Query: 242 SSTVPITQLMTATAVAVVIVMALIQSGNGQITVGGFVSFITAMLMLLTPLKQLAEINGPL 301 + + L T++A+V+ + + +G +TVG F+T + +L PL+Q+ I Sbjct: 298 GNMSAMV-LAYYTSMALVLWVGGQRVASGALTVGSLTEFLTFITILQQPLRQIGMIVNAS 356 Query: 302 QRGMAAAEEVYKLIDKTTERTTGQALSGRA--TGRLDFVEVGFTYPGH---EQLALKNIN 356 R + +++++D E + G L F V F Y GH ++ LK+I+ Sbjct: 357 ARATGSGARLFEVLDTDPEIKDAENAHDLKIDKGLLRFESVSFAY-GHGPNDRTVLKDIS 415 Query: 357 LHVEAGETIAFVGMSGGGKSTLVSLIPGFYSCTAGEIRLDGRDIETISLESLRRQIAMVN 416 V GE + VG G GKSTL LIP FY + G I +DG+D+ +SL SLR +++V Sbjct: 416 FEVRKGEVLGIVGAPGSGKSTLAHLIPRFYEVSGGRITIDGQDLRALSLSSLRSAVSLVQ 475 Query: 417 QNTVLFDDTLAANIAYGDATPDPARIEAAVEAAHLGDVVAGLAEGLQTRLGDNGSRLSGG 476 Q LFD ++ N+AY + R+ A A + + V L +G TR+G+ G LSGG Sbjct: 476 QENFLFDTSVHNNVAYPEPQAGEERVIEAASVAQIHEHVEQLPKGYTTRVGERGVALSGG 535 Query: 477 QRQRVAIARAIYKDAPILILDEATSALDTESERAVQAALERLMQGRTTFVIAHRLSTIER 536 QRQR+ IAR + IL+LD++T+A+D +E+ V+AAL+ ++ T +IAHRLS+++ Sbjct: 536 QRQRMTIARGLLDQPSILVLDDSTAAIDPATEQRVRAALQSSLKDTATIIIAHRLSSLKH 595 Query: 537 ADRIVVLAHGQIAEIGTHQELLQKEGVYANLYRLQFSQQKEA 578 AD+I+VL G+I E GTH EL+ G YA L+ LQ +E Sbjct: 596 ADQIIVLDEGRIVERGTHAELIAAGGRYAELWSLQNRGAQEG 637 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.135 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,115,808 Number of extensions: 42940 Number of successful extensions: 335 Number of sequences better than 1.0e-08: 61 Number of HSP's gapped: 268 Number of HSP's successfully gapped: 64 Length of query: 580 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 492 Effective length of database: 895,685 Effective search space: 440677020 Effective search space used: 440677020 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 132 (55.5 bits)