BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3469.p (487 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980616|ref|YP_001352227.1| ribonuclease G (RNAse G) (cytop... 870 0.0 gi|152979950|ref|YP_001353036.1| ribonuclease E (RNAse E) protei... 264 1e-71 >gi|152980616|ref|YP_001352227.1| ribonuclease G (RNAse G) (cytoplasmic axial filament protein) [Janthinobacterium sp. Marseille] Length = 487 Score = 870 bits (2247), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/487 (84%), Positives = 452/487 (92%) Query: 1 MSEDILINITPQETRVALILQGAVQELHIERTLSRGLAGNIYLGKVVRVLPGMQSAFIDI 60 MSEDIL+N+TPQETRVAL+LQGAVQELH+ERTLSRG+AGNIYLGKVVRVLPGMQSAF+DI Sbjct: 1 MSEDILVNVTPQETRVALVLQGAVQELHVERTLSRGMAGNIYLGKVVRVLPGMQSAFVDI 60 Query: 61 GLERAAFLHVADIWEARPHDGQNAPAIPIEKLLHDGQTITVQVIKDPIGTKGARLSTQIS 120 GLERAAFLHVADIW+AR H+G + PIE++L+DGQ +TVQVIKDPIGTKGARLSTQIS Sbjct: 61 GLERAAFLHVADIWDARSHEGPPSSPTPIERVLYDGQAVTVQVIKDPIGTKGARLSTQIS 120 Query: 121 IAGRMLVYLPQDKHIGISQRIENEAERELLRSKVQALLPPEEKGGFIIRTMAEDASDADL 180 IAGRMLVYLPQ+ HIGISQRIENE ERE+LR KVQ L+ PEEKGGFIIRTMAEDASD DL Sbjct: 121 IAGRMLVYLPQESHIGISQRIENEVEREILREKVQKLILPEEKGGFIIRTMAEDASDGDL 180 Query: 181 QMDVEYLRTTWATITKQAKTKPAPTLLHQDLSLAQRVLRDFVSDHTATIQVDSRENFHML 240 Q DVEYLR TWA IT+QAKTKPAPTLL+QDL LAQRV+RDFV+D TA+IQVDSREN+ L Sbjct: 181 QADVEYLRKTWANITQQAKTKPAPTLLYQDLDLAQRVMRDFVNDETASIQVDSRENYQKL 240 Query: 241 QEFGAIYTPSVLTKLMHYRGERPLFDLYGVEEEIERALGRRVDLKSGGYLIVDQTEAMTT 300 +FG +YTPSVL+KL HY GERPLFDLYGVEEEI+RALGRRVDLKSGGYLIVDQTEAMTT Sbjct: 241 LQFGELYTPSVLSKLAHYPGERPLFDLYGVEEEIQRALGRRVDLKSGGYLIVDQTEAMTT 300 Query: 301 IDVNTGSFVNGRNFDDTIFKTNLEAAHAIARQLRLRNLGGIIILDFIDMESTEHRQAVLA 360 IDVNTGSFVNGRNFDDTIFKTNLEA+HAIARQLRLRNLGGI+ILDFIDME+ EH+ AVL Sbjct: 301 IDVNTGSFVNGRNFDDTIFKTNLEASHAIARQLRLRNLGGIMILDFIDMENPEHKSAVLN 360 Query: 361 ELGKALQRDRTKISVSGFSTLGLVEMTRKRTRESLAHILCETCPACKGRGQVKTSRTVCY 420 EL +AL RDRTK+SVSGFS LGLVEMTRKRTRESLAHILCE CPAC G+GQVKT+RT+CY Sbjct: 361 ELNRALSRDRTKVSVSGFSALGLVEMTRKRTRESLAHILCEPCPACSGKGQVKTARTICY 420 Query: 421 EILREVMREAKQFNPREFRILASQVVVDMFLEEESQHLAMLGDFIGKPISLQVQSDYQQE 480 EILRE+ REAKQFNPREFRILASQVV+DMFLEEESQHLAMLGDF+GKPISLQV++ Y QE Sbjct: 421 EILRELTREAKQFNPREFRILASQVVIDMFLEEESQHLAMLGDFLGKPISLQVETVYHQE 480 Query: 481 QYDIILM 487 QYD+ILM Sbjct: 481 QYDVILM 487 >gi|152979950|ref|YP_001353036.1| ribonuclease E (RNAse E) protein [Janthinobacterium sp. Marseille] Length = 974 Score = 264 bits (674), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 154/452 (34%), Positives = 247/452 (54%), Gaps = 4/452 (0%) Query: 5 ILINITPQET-RVALILQGAVQELHIERTLSRGLAGNIYLGKVVRVLPGMQSAFIDIGLE 63 +L N T QE RVA++ + ++ IE T NIY G + R+ P +++ F+ G + Sbjct: 4 MLFNATQQEELRVAIVNGQKLIDIDIETTGREQRKSNIYKGVITRIEPSLEACFVSYGED 63 Query: 64 RAAFLHVADIWEARPHDGQNAPAIPIEKLLHDGQTITVQVIKDPIGTKGARLSTQISIAG 123 R FL ++ +G + I+ L +GQ I VQV K+ G KGA L++ IS+AG Sbjct: 64 RHGFLPFKEVARTYFKEGVDVRNASIKDALREGQEIMVQVEKEERGNKGAALTSFISLAG 123 Query: 124 RMLVYLPQD-KHIGISQRIENEAERELLRSKVQALLPPEEKGGFIIRTMAEDASDADLQM 182 R LV +P + + G+S+R+E E +EL + + LP + I RT + +LQ Sbjct: 124 RYLVLMPNNPRGGGVSRRVEGEDRQELRETMDKLDLP--QGMSVIARTAGIGRNVDELQW 181 Query: 183 DVEYLRTTWATITKQAKTKPAPTLLHQDLSLAQRVLRDFVSDHTATIQVDSRENFHMLQE 242 D+ YL W I ++ L++Q+ SL R +RD+ I +D+ E + Q+ Sbjct: 182 DLNYLMQLWRAIEGAGQSGGGAFLIYQESSLVIRAIRDYFQPDIGEILIDTDEIYEQAQQ 241 Query: 243 FGAIYTPSVLTKLMHYRGERPLFDLYGVEEEIERALGRRVDLKSGGYLIVDQTEAMTTID 302 F + P ++ ++ YR + PLF + +E +IE A R V L SGG +++D TEA+ ++D Sbjct: 242 FMSHVMPDMVHRVKRYRDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSVD 301 Query: 303 VNTGSFVNGRNFDDTIFKTNLEAAHAIARQLRLRNLGGIIILDFIDMESTEHRQAVLAEL 362 VN+ G + + T F TN EAA +ARQLRLR+LGG+I++DFIDME+ ++++ V L Sbjct: 302 VNSARATRGSDIETTAFHTNCEAAEEVARQLRLRDLGGLIVIDFIDMENAKNQREVETRL 361 Query: 363 GKALQRDRTKISVSGFSTLGLVEMTRKRTRESLAHILCETCPACKGRGQVKTSRTVCYEI 422 AL DR ++ + S GL+E++R+R R SL+ TCP C G G ++ + + ++ Sbjct: 362 KDALHYDRARVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQV 421 Query: 423 LREVMREAKQFNPREFRILASQVVVDMFLEEE 454 LR + EA + N + A V L E+ Sbjct: 422 LRIIQEEAMKENSASIHVQAPVDVAAFLLNEK 453 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.136 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,021,221 Number of extensions: 40591 Number of successful extensions: 119 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 117 Number of HSP's successfully gapped: 2 Length of query: 487 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 400 Effective length of database: 899,382 Effective search space: 359752800 Effective search space used: 359752800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)