BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3468.p
         (204 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981387|ref|YP_001352228.1| nucleotide-binding protein impl...   247   5e-67
gi|152981405|ref|YP_001353042.1| nucleotide-binding protein impl...    74   7e-15

>gi|152981387|ref|YP_001352228.1| nucleotide-binding protein
           implicated in inhibition of septum formation
           [Janthinobacterium sp. Marseille]
          Length = 206

 Score =  247 bits (630), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 132/210 (62%), Positives = 155/210 (73%), Gaps = 10/210 (4%)

Query: 1   MKQADHKIYLASKSPRRRELLRQIGIDFELLL------SDKEVDESVLPGEAPLDYVARV 54
           MK    KIYLASKSPRRRELLRQ+GI+FELLL         EV E VLP E   DYVARV
Sbjct: 1   MKPLPKKIYLASKSPRRRELLRQMGIEFELLLLRDQTPRGPEVSEIVLPNERAEDYVARV 60

Query: 55  TRAKLDSAQQTMILRQLPHRPLLAADTTVVVDDLILGKPADHDEAVRMITLLSGRTHQVL 114
           T  K   AQ+TM  R+LP RP+LAADTTVV+D  ILGKPAD  EA+ M+  LSGRTHQVL
Sbjct: 61  TLEKAAFAQKTMWWRKLPVRPILAADTTVVLDGRILGKPADEAEAIDMLRSLSGRTHQVL 120

Query: 115 TSVAVGVTHGVDTEVWQIVQQSDVSFAALTDEAIAAYCNTVEPYDKAGAYGIQGLASVFI 174
           T VAV +    D + +Q+ Q+SDV+FAAL D+ I AYC T EPYDKAG YGIQG A++FI
Sbjct: 121 THVAVLL----DDKTFQLTQRSDVAFAALPDQVIRAYCATSEPYDKAGGYGIQGQAALFI 176

Query: 175 SHIVGSHSGIMGLPLFETAQLLQQAGVRIL 204
             + GS+SGIMGLP+FET +LL+QAG+ IL
Sbjct: 177 QDMAGSYSGIMGLPIFETGKLLEQAGIHIL 206


>gi|152981405|ref|YP_001353042.1| nucleotide-binding protein
           implicated in inhibition of septum formation
           [Janthinobacterium sp. Marseille]
          Length = 204

 Score = 73.9 bits (180), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 100/203 (49%), Gaps = 14/203 (6%)

Query: 7   KIYLASKSPRRRELLRQIGIDFELLLSDKEVDESVLPGEAPLDYVARVTRAKLDSAQQTM 66
           ++ L S S  R+ELL ++G+ FE++  D  +DE+ LPGE P       T  +L   +   
Sbjct: 9   RLILGSSSVYRKELLSRLGLPFEVMSPD--IDETALPGETP-----AATALRLAQQKAAA 61

Query: 67  ILRQLPHRPLLAADTTVVVDDLILGKPADHDEAVRMITLLSGRTHQVLTSVAVGV---TH 123
           I  + P   ++ +D    +D   +GKP +H  A+R +  + GR  +V+   A+ +     
Sbjct: 62  IAARAPDALVIGSDQVATLDGAQIGKPGNHANALRQLQTMRGR--EVIFHTALCLFDGRS 119

Query: 124 GVDTEVWQIVQ-QSDVSFAALTDEAIAAYCNTVEPYDKAGAYGIQGLASVFISHIVGSH- 181
           G+ +   Q+   Q+ V+F  L D  + AY    +PYD AG+   +GL    +  I  S  
Sbjct: 120 GISSPQIQLDNIQTFVTFRDLPDAELDAYLRIEQPYDCAGSAKNEGLGIAILEKISSSDP 179

Query: 182 SGIMGLPLFETAQLLQQAGVRIL 204
           + + GLPL     +L++A +   
Sbjct: 180 TALTGLPLIALTGMLRRANISFF 202


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.135    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 457,017
Number of extensions: 18218
Number of successful extensions: 70
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 2
Length of query: 204
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 125
Effective length of database: 928,958
Effective search space: 116119750
Effective search space used: 116119750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)