BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3467.p
         (156 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981375|ref|YP_001352229.1| rRNA large subunit methyltransf...   275   1e-75

>gi|152981375|ref|YP_001352229.1| rRNA large subunit
           methyltransferase [Janthinobacterium sp. Marseille]
          Length = 156

 Score =  275 bits (703), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 131/155 (84%), Positives = 140/155 (90%)

Query: 1   MQLVIAAVGHKMPAWIETGFQEYAKRMPPECRIILKEIKPVERSGSRTAETVMAQEREKI 60
           MQLVIAAVGHKMPAWIE+GF EYAKRMP +CR+ LKEIKPVERSGS+TAET MA ER KI
Sbjct: 1   MQLVIAAVGHKMPAWIESGFGEYAKRMPADCRVHLKEIKPVERSGSKTAETAMALERAKI 60

Query: 61  EAALPKGARVIALDERGRDWTSVQLSQQLVQWQQDGRDVAFVIGGADGLDPGFKAGADTL 120
           EAALPKGAR+IALDE G+D TSVQL+Q L QWQQDGRDVAF+IGGADGLD  FK  AD L
Sbjct: 61  EAALPKGARIIALDEHGKDLTSVQLAQLLTQWQQDGRDVAFIIGGADGLDAEFKKNADML 120

Query: 121 IRISSMTLPHGMVRVMLAEQLYRAWSITQNHPYHR 155
           IRISSMTLPHGMVRV+LAEQLYRAWSITQNHPYHR
Sbjct: 121 IRISSMTLPHGMVRVLLAEQLYRAWSITQNHPYHR 155


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.134    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 345,308
Number of extensions: 11680
Number of successful extensions: 43
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 1
Length of query: 156
Length of database: 1,221,021
Length adjustment: 76
Effective length of query: 80
Effective length of database: 940,049
Effective search space: 75203920
Effective search space used: 75203920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)