BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3463.p
         (276 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982965|ref|YP_001354119.1| mechanosensitive ion channel pr...    68   7e-13
gi|152982694|ref|YP_001355270.1| mechanosensitive ion channel pr...    60   2e-10

>gi|152982965|ref|YP_001354119.1| mechanosensitive ion channel
           protein [Janthinobacterium sp. Marseille]
          Length = 284

 Score = 67.8 bits (164), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 92/197 (46%), Gaps = 2/197 (1%)

Query: 78  LEVCGVPTTSFAAVIGAVGVALGVAWSGLLSNFAAGIFLVVLRPFKVGDYITAAGQTGSV 137
           L+V GV   S A  +G  GVALG A   +LSN  +G+F+++ + F++GD I      G+V
Sbjct: 85  LDVVGVDARSLATGLGLGGVALGFALKDVLSNLVSGLFILIAQTFEIGDQIVVGETEGTV 144

Query: 138 SDIGLVTTIITTDNNLRVIIGNNKLFSENIINYNVNATRRTDLRCQIAYSVDPQQAIAKL 197
             I +  T I T +   V++ N ++F   + N   +  RRT +   + Y  D + A++ +
Sbjct: 145 ERIQIRATHIRTYDGRLVLVPNGEVFMSRVTNNTASELRRTSVFVYLEYGQDIELAMSLI 204

Query: 198 TDRITAIPNVLQTPAPGIAIQEFNATGTLIAIR--VHAPTPNFGQVYNDVQNAIAEVCLK 255
              + A+P V   PA  I +++       I  R    +       + +DV+ AI +    
Sbjct: 205 LKTVKAVPGVATNPAASIRLRDLTTEHFYIESRFWTDSRRTKLRLISSDVRLAIIKALEN 264

Query: 256 QGWPAPATYQVAVPLAQ 272
            G   P   Q  V + +
Sbjct: 265 AGIELPNPNQRDVSITK 281


>gi|152982694|ref|YP_001355270.1| mechanosensitive ion channel
           protein [Janthinobacterium sp. Marseille]
          Length = 374

 Score = 60.1 bits (144), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 71/138 (51%), Gaps = 3/138 (2%)

Query: 67  VILRILLVMGILEVCGVPTTSFAAVIGAVGVALGVAWSGLLSNFAAGIFLVVLRPFKVGD 126
           V+L +LL   +L   GV  T+F A +G  G+A+  A   +LS+  A + + + +PF+VGD
Sbjct: 148 VMLTVLL--AVLANLGVNITAFVASLGIGGIAIAFALQAILSDLFASLSIGLDKPFEVGD 205

Query: 127 YITAAGQTGSVSDIGLVTTIITTDNNLRVIIGNNKLFSENIINYNVNATRRTDLRCQIAY 186
           +I      G+V  +G+ TT + + +  +++  N +L    I NY   + RR      I +
Sbjct: 206 FIVVDDLLGTVEYVGIRTTRLRSLSGEQLVRSNTELLKSPIRNYKRMSERRVLFNFGITH 265

Query: 187 SVDPQQAIAKLTDRITAI 204
              P   IA+L+  +  I
Sbjct: 266 DT-PVDKIAELSSTVRKI 282


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.324    0.138    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 536,851
Number of extensions: 18981
Number of successful extensions: 82
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 2
Length of query: 276
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 194
Effective length of database: 917,867
Effective search space: 178066198
Effective search space used: 178066198
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 129 (54.3 bits)