BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3462.p
         (422 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979938|ref|YP_001352233.1| phosphoribosylamine--glycine li...   749   0.0  

>gi|152979938|ref|YP_001352233.1| phosphoribosylamine--glycine
           ligase [Janthinobacterium sp. Marseille]
          Length = 423

 Score =  749 bits (1934), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/422 (85%), Positives = 388/422 (91%)

Query: 1   MKILVVGSGGREHALAWAIAKSPRIQTVYVAPGNGGTALDERLQNIAITDPMALADFVEQ 60
           MKILVVGSGGREHALAW +A+S RIQTVYVAPGNGGTALD+RL+NIAITDP  LA F  Q
Sbjct: 1   MKILVVGSGGREHALAWKLAQSERIQTVYVAPGNGGTALDDRLKNIAITDPQELAQFAVQ 60

Query: 61  EHVALTVVGPEGPLAAGIVNVFRARGLKIFGPTKEAAQLESSKDFAKAFMQRHAIPTAQY 120
           EH+ALTVVGPE PLAAGIVN+FR +GLKIFGPT+EAAQLESSKDFAK+FMQRHAIPTA+Y
Sbjct: 61  EHIALTVVGPETPLAAGIVNIFRNQGLKIFGPTREAAQLESSKDFAKSFMQRHAIPTAEY 120

Query: 121 QTFSDVAAAHDYIAQQGAPIVIKADGLAAGKGVVVAMTLEEAHTAVDMMLSDNKLGDAGA 180
           QTFS+V AAHDYI Q+GAPIVIKADGLAAGKGVVVAM+L+EAH AVDMMLSDNKLGDAGA
Sbjct: 121 QTFSEVNAAHDYINQKGAPIVIKADGLAAGKGVVVAMSLDEAHQAVDMMLSDNKLGDAGA 180

Query: 181 RVVIEQFLAGEEASFIVMVDGKNILPLATSQDHKRLQDHDQGPNTGGMGAYSPAPIVTPA 240
           RVVIE+FLAGEEASFIVMVDGKNILPLATSQDHKRLQD+D+GPNTGGMGAYSPAPIVTPA
Sbjct: 181 RVVIEEFLAGEEASFIVMVDGKNILPLATSQDHKRLQDNDEGPNTGGMGAYSPAPIVTPA 240

Query: 241 LHARVMREIIVPTVQGMAKDGIPFSGFLYAGLMIDAEGNPKTLEFNCRMGDPETQPIMAR 300
           LHARVMREII PTVQGMAKDGIPFSGFLYAGLMID +GNPKTLEFNCRMGDPETQPIMAR
Sbjct: 241 LHARVMREIIQPTVQGMAKDGIPFSGFLYAGLMIDDKGNPKTLEFNCRMGDPETQPIMAR 300

Query: 301 LKTDLLTVFEHAVTGSLDKVELEWDRRTALGVVMAAHGYPEEPRRGDLITDIPAETADCV 360
           LKTDL+ V EHAV G+LD +ELEWDRRTALGVVMAA GYP+ PR+GD+I+ IPAE AD V
Sbjct: 301 LKTDLVGVMEHAVNGTLDTIELEWDRRTALGVVMAAAGYPDAPRKGDVISGIPAENADSV 360

Query: 361 TFHAGTTLTGDKLTTNGGRVLCVVGLGDSVKVAQKHAYDAADLIHFAGSQMRRDIGWRAL 420
           TFHAGT L  D+LTT GGRVLCVVGLGDSVKVAQK AY   D IHF G+Q RRDIGWRAL
Sbjct: 361 TFHAGTALNDDQLTTTGGRVLCVVGLGDSVKVAQKQAYQVLDQIHFDGAQFRRDIGWRAL 420

Query: 421 KR 422
           KR
Sbjct: 421 KR 422


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.135    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,072,959
Number of extensions: 47450
Number of successful extensions: 133
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 336
Effective length of database: 903,079
Effective search space: 303434544
Effective search space used: 303434544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)