BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3460.p (553 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981573|ref|YP_001352235.1| hypothetical protein mma_0545 [... 736 0.0 >gi|152981573|ref|YP_001352235.1| hypothetical protein mma_0545 [Janthinobacterium sp. Marseille] Length = 501 Score = 736 bits (1901), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/427 (82%), Positives = 388/427 (90%) Query: 1 MINPLPIASHPGGLLCLLPQLANRHGCITGATGTGKTVTLQVLAQALSDIGVPVFMADVK 60 M NPL IA + L LLP+LANRHGCITGATGTGKTVTLQ LAQALSDIGVPVFMADVK Sbjct: 1 MPNPLLIAKNKEHELTLLPELANRHGCITGATGTGKTVTLQTLAQALSDIGVPVFMADVK 60 Query: 61 GDLSGLGKAGSASPKTTARLAQLGLPEPAWAAAPVAFWDVYGQQGHPVRATISDMGPLML 120 GDLSG+ KAG+AS K R LGL PAWA PV FWDVYG++GHPVRATISD+GPL+L Sbjct: 61 GDLSGIAKAGTASGKVKERFDMLGLEHPAWAGVPVTFWDVYGEKGHPVRATISDLGPLLL 120 Query: 121 ARMLNLNDTQQGVLQLVFKIADDHGLLLLDTKDLRAMLQHVGENAAQFKTEYGNISAASV 180 ARMLNLNDTQQGVLQLVFKIADD+G+LLLDTKDLRAMLQ+VG+NAA F+TEYGNIS+AS+ Sbjct: 121 ARMLNLNDTQQGVLQLVFKIADDNGMLLLDTKDLRAMLQYVGDNAATFQTEYGNISSASI 180 Query: 181 GAIQRGLIAIDEQGGDRFFGEPMLNIEDWMQTDAQGRGVINILAADRLMNAPRLYSTFLL 240 GAIQRGLI IDEQGGD FFGEPMLNIED MQTDA+G+GV+NILAAD+LMN+P LYSTFLL Sbjct: 181 GAIQRGLIGIDEQGGDTFFGEPMLNIEDLMQTDAKGKGVVNILAADKLMNSPLLYSTFLL 240 Query: 241 WMLSELFEHLPEVGDLDKPKMAFFFDEAHLLFDEAPKPLLQKIEQVVRLIRSKGVGIYFV 300 WMLSELFEHLPEVGD+DKPK+AFFFDEAHLLF EAPKPLLQKIEQVVRLIRSKGVG+YFV Sbjct: 241 WMLSELFEHLPEVGDMDKPKLAFFFDEAHLLFSEAPKPLLQKIEQVVRLIRSKGVGVYFV 300 Query: 301 TQNPLDIPDTVLGQLGNRVQHALRAYTPRDQKAVQAAAETFRPNPMVNTAQAITELGVGE 360 TQNPLDIPDTVLGQLGNRVQHALRAYTPRDQKAVQAAA+TFRPNP ++ Q ITELGVGE Sbjct: 301 TQNPLDIPDTVLGQLGNRVQHALRAYTPRDQKAVQAAAQTFRPNPALDVVQVITELGVGE 360 Query: 361 ALVSFLDDKGRPNMVERGYVLTPASQIGPLSAEERRALIASSLVAGVYEQAIDRESAYER 420 ALVSFLD+KGRP +VERG+VL PASQIGP++ ER ALIASS+VAGVYE+A+DRESAYE+ Sbjct: 361 ALVSFLDEKGRPTIVERGFVLPPASQIGPITEAERTALIASSVVAGVYEKAVDRESAYEK 420 Query: 421 LKGRAVQ 427 LK RA Q Sbjct: 421 LKERATQ 427 Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 27/46 (58%), Positives = 36/46 (78%) Query: 508 GGLFGNGNRRSDSPLQAMVKSAARSIGSQVGRELIRGVLGSLMKKR 553 GG RRSD+ ++AM+KSA R++GS GRE+IRGVLGSL+KK+ Sbjct: 456 GGTKKGSARRSDTVVEAMLKSAVRTMGSTAGREIIRGVLGSLLKKK 501 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.317 0.135 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,226,865 Number of extensions: 50762 Number of successful extensions: 238 Number of sequences better than 1.0e-08: 1 Number of HSP's gapped: 238 Number of HSP's successfully gapped: 2 Length of query: 553 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 465 Effective length of database: 895,685 Effective search space: 416493525 Effective search space used: 416493525 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)