BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3459.p
         (304 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982668|ref|YP_001352239.1| transporter of the DMT superfam...   400   e-113
gi|152979974|ref|YP_001353269.1| transporter of the DMT superfam...   174   8e-45

>gi|152982668|ref|YP_001352239.1| transporter of the DMT superfamily
           [Janthinobacterium sp. Marseille]
          Length = 301

 Score =  400 bits (1029), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 202/300 (67%), Positives = 244/300 (81%), Gaps = 1/300 (0%)

Query: 4   ATSHSTPRQAFLGGLLLAIVGAIFFSAKAIVAKLMYRYQVDAVMVITLRMVFSFPMFAAV 63
           A S S  R+ FL GL +A++GAI FS KAIVAKL+YRY VDAV +I  RM+FS P F A+
Sbjct: 2   ADSASPERKQFLIGLTIALLGAILFSTKAIVAKLIYRYGVDAVTLIAFRMMFSLPFFIAI 61

Query: 64  AIWKARTQPPLARADYLRILVLGLMGYYLSSFLDFLGLQYISAGLERLILFLTPSFVMLI 123
            +WKART  PL R++  +I++LGL+GYYLSSFLDFLGLQYIS GLERLILFLTPSFV+LI
Sbjct: 62  GVWKARTAVPLTRSEKGQIVILGLLGYYLSSFLDFLGLQYISVGLERLILFLTPSFVLLI 121

Query: 124 AFFFFKRKVGAIEWGALLVSYFGTVLVLQHDLHTGGSEVILGSALVLGSALSYSIYLIGS 183
           + F  KRK+  +EW AL +SY GTVLV  HD   GGS V LGS LVLGSA+SY+IYL+GS
Sbjct: 122 SIFVMKRKITLLEWAALGISYLGTVLVFVHDARIGGSNVALGSLLVLGSAISYAIYLLGS 181

Query: 184 GELVRRVGAVRLVAYAMCVSSVACVIQFFILRPPAELLTQVAPVYQLSLFNAVFCTVLPV 243
           GELV+RVGA+RLVAYAMCVSSVAC++QFF+LR PA +L Q   VY LS+ N  FCTV+PV
Sbjct: 182 GELVKRVGALRLVAYAMCVSSVACIVQFFVLR-PASMLLQPLAVYGLSMINGFFCTVMPV 240

Query: 244 FLTMVAVARIGAPTAAQAGLVGPVSTLFMGAVLLDEPITAIQLLGTALVLAGMWLLSRKK 303
           FLTM+AV RIGA TA+QAG++GPVS LF+ A++LDEPIT IQL GTALVL G++LLS+K+
Sbjct: 241 FLTMIAVDRIGAATASQAGMIGPVSILFLAALILDEPITGIQLAGTALVLCGIYLLSKKR 300


>gi|152979974|ref|YP_001353269.1| transporter of the DMT superfamily
           [Janthinobacterium sp. Marseille]
          Length = 318

 Score =  174 bits (440), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 121/298 (40%), Positives = 174/298 (58%), Gaps = 8/298 (2%)

Query: 11  RQAFLGGLLLAIVGAIFFSAKAIVAKLMYRY-QVDAVMVITLRMVFSFPMFAAVAIWKAR 69
           +Q    G L AI+ A  FS KAI  KL Y    VDA+ ++TLRM  + P+FA + +W +R
Sbjct: 9   KQWAADGRLYAILAAAGFSLKAIFVKLGYAAGPVDALTLLTLRMGLALPLFAWL-VWLSR 67

Query: 70  TQPPLAR---ADYLRILVLGLMGYYLSSFLDFLGLQYISAGLERLILFLTPSFVMLIAFF 126
             P   R    D LRI +LG++GYYLSS  DF GL+YISAGLERLIL+L P+ V++    
Sbjct: 68  -DPQAERLTVMDGLRICLLGMVGYYLSSLFDFYGLEYISAGLERLILYLYPTMVLVFQAI 126

Query: 127 FFKRKVGAIEWGALLVSYFGTVLVLQHD--LHTGGSEVILGSALVLGSALSYSIYLIGSG 184
             +R+  +    A+ + Y G  +   HD  +    ++VI G+A V  SA++Y+ Y +G+G
Sbjct: 127 ASRRRPSSRVVQAMAICYLGLGIAFIHDVGMTEHSAQVIKGAAWVFASAVTYAFYYLGTG 186

Query: 185 ELVRRVGAVRLVAYAMCVSSVACVIQFFILRPPAELLTQVAPVYQLSLFNAVFCTVLPVF 244
            +V R+G++RL   A   SS+  ++ F      ++L    + V+  +   AV  TVLPV+
Sbjct: 187 AMVHRLGSMRLAGLAGSASSIFVIMHFAFSGNVSDLPALPSAVWLNAGLMAVVSTVLPVY 246

Query: 245 LTMVAVARIGAPTAAQAGLVGPVSTLFMGAVLLDEPITAIQLLGTALVLAGMWLLSRK 302
              +AV R+GA  AA  G +GPV T+    VLL EPI+A QL G ALV+ G+  L  K
Sbjct: 247 WLALAVQRMGATQAAAVGSLGPVLTVLASWVLLSEPISAFQLGGLALVMFGVSRLKPK 304


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.331    0.143    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 576,268
Number of extensions: 21277
Number of successful extensions: 90
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 2
Length of query: 304
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 221
Effective length of database: 914,170
Effective search space: 202031570
Effective search space used: 202031570
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 129 (54.3 bits)