BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3457.p (393 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981753|ref|YP_001353991.1| ABC-type branched-chain amino a... 115 3e-27 gi|152981426|ref|YP_001352468.1| ABC-type branched-chain amino a... 70 2e-13 gi|152981352|ref|YP_001354956.1| ABC-type branched-chain amino a... 55 6e-09 >gi|152981753|ref|YP_001353991.1| ABC-type branched-chain amino acid transport systems, periplasmic component [Janthinobacterium sp. Marseille] Length = 372 Score = 115 bits (289), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 95/353 (26%), Positives = 154/353 (43%), Gaps = 13/353 (3%) Query: 42 PTEIVLGQSAPFTGPAAEIGRDFQEGARSYFSQVNAKGGIHGRRVRLLSLDDRYEPERTL 101 P IV+GQ+ + P A +GRD+ G ++YF +NA GG++G+R+R + DD+ + Sbjct: 25 PNTIVVGQAIDLSSPNASVGRDYVAGIKTYFDALNAAGGVNGKRIRYIVRDDQAQAAVAA 84 Query: 102 ANTQQLIWRDKVFALFGYSGTPTVLAAL--PAMREAGIPLIAPHSGASSLREPFNRLIFH 159 +LI RD++ L G G T A L PA + + + L AP L R++F Sbjct: 85 KVVTELIERDQIDFLLGGVGDSTAQAVLNTPAFKRSNLVLFAPLVDTVELNS--TRVLFW 142 Query: 160 VRASYQQETDFLLRQLQGTGRLRVAVFYQNDELGKELLDNLRLRALVYGLTVVGSVAIER 219 R SY QE +L G V + YQ+ ++ NL G+ + GS + Sbjct: 143 -RPSYLQEVRHILSHFSQLGMTDVGIAYQDTPWAQQAFRNLSAELRGRGVKLNGSAKLGN 201 Query: 220 NSDAVTTAAEQFMKMQPDVVIQVVPYLPAAALITRMRAAGYLGGFSNYSFVGSHSLATRL 279 N A +P VI + + + + R + + S + +L R Sbjct: 202 NEKQNAQEAASLATGKPGFVIVIADTISTSLFLKEFRRSAPQTFVAGTSLINLETL--RE 259 Query: 280 KDGGVGTEIT---QVVPFPNKARLPIVYEYQKAMARSSRACCNFIGLEGYIAARVLVEAL 336 G E T QVVP PN + I E+ M + + + LEG+ A+ L A+ Sbjct: 260 LAGARAVEWTVFSQVVPNPNTGKSSIQLEHLNMMKKYRDEPPSSLTLEGFTVAKTLTRAI 319 Query: 337 RRAGPQLSREGLIRALESITPANYDGGGFSLHFSRTDHTGSDFVDLTAIGTAG 389 +R+ + S + ++ L + AN D GG S+ S S ++D+ G Sbjct: 320 QRS--KRSNQAALQELMN-QDANIDLGGLSVTASPNSRHLSGYLDIALFKKNG 369 >gi|152981426|ref|YP_001352468.1| ABC-type branched-chain amino acid transport systems, periplasmic component [Janthinobacterium sp. Marseille] Length = 385 Score = 70.1 bits (170), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 75/160 (46%), Gaps = 8/160 (5%) Query: 20 TLATCLVAA--GSTVATAAENGVTPTEIVLGQSAPFTGPAAEIGRDFQEGARSYFSQVNA 77 +LA C+ A +T A A E I +G + P TGP A G GAR VN Sbjct: 8 SLAACIGLAMFAATSAYAQET------IKIGVTEPLTGPVAAAGTYVTNGARIAADYVNQ 61 Query: 78 KGGIHGRRVRLLSLDDRYEPERTLANTQQLIWRDKVFALFGYSGTPTVLAALPAMREAGI 137 GG+ G++++L+ D++ P + + ++LI +DKV L G + LA +P + E + Sbjct: 62 NGGVLGKKIQLVIEDNKSNPREAVNSVEKLILKDKVPVLMGAWSSTFTLAIMPKLIEYEV 121 Query: 138 PLIAPHSGASSLREPFNRLIFHVRASYQQETDFLLRQLQG 177 PL+ + +S + N +F + E + + G Sbjct: 122 PLVVEAASSSKITTAGNPWVFRTSPTSAMEAQAFSKVIDG 161 >gi|152981352|ref|YP_001354956.1| ABC-type branched-chain amino acid transport systems, periplasmic component [Janthinobacterium sp. Marseille] Length = 376 Score = 55.5 bits (132), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 8/142 (5%) Query: 25 LVAAGSTVATAAENGVTPTEIVLGQSAPFTGPAAEIGRDFQEGARSYFSQVNAKGGIHG- 83 L+A+ ST+ A E + +G +AP TGP A G+D Q GAR ++N K + G Sbjct: 11 LIASASTLVQAQE----VQTVKIGLAAPLTGPQAFYGKDSQNGARLAVDELNEKKIVVGG 66 Query: 84 --RRVRLLSLDDRYEPERTLANTQQLIWRDKVFALFGYSGTPTVLAALPAMREAGIPLIA 141 R LLS DD +P++ A Q+ V A+ G++ + T + A + G+P ++ Sbjct: 67 KQLRFELLSEDDAADPKQGAAVAQRFCDL-HVNAVIGHTNSGTAIPAARIYHQCGLPNLS 125 Query: 142 PHSGASSLREPFNRLIFHVRAS 163 P + + L + F + A+ Sbjct: 126 PSATSPELTKSAYNTTFRMLAN 147 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.136 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 853,432 Number of extensions: 33744 Number of successful extensions: 124 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 125 Number of HSP's successfully gapped: 4 Length of query: 393 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 308 Effective length of database: 906,776 Effective search space: 279287008 Effective search space used: 279287008 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)