BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3453.p (518 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981055|ref|YP_001351702.1| response regulator/GGDEF domain... 146 4e-36 gi|152982609|ref|YP_001351719.1| hypothetical protein mma_0029 [... 141 1e-34 gi|152982100|ref|YP_001354823.1| hypothetical protein mma_3133 [... 108 6e-25 gi|152982153|ref|YP_001353313.1| diguanylate cyclase [Janthinoba... 108 7e-25 gi|152982523|ref|YP_001355121.1| diguanylate cyclase [Janthinoba... 106 3e-24 >gi|152981055|ref|YP_001351702.1| response regulator/GGDEF domain-containing protein [Janthinobacterium sp. Marseille] Length = 341 Score = 146 bits (368), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 76/176 (43%), Positives = 113/176 (64%), Gaps = 1/176 (0%) Query: 335 ELHQANQQLELLAHQDGLTGLANRRHLDTVLAAEWRRALRSNAVLSLIMIDVDFFKQYND 394 +L ++N +L+ L + DGLTG+ANRR+ D L+AEW+RA R LS+++IDVD FK YND Sbjct: 162 QLQKSNFELQRLTNTDGLTGIANRRYFDDYLSAEWKRARREQQELSILLIDVDNFKLYND 221 Query: 395 LYGHQAGDECLRRIAAVLKERQRRPGDLAARYGGEEMVMLLPDTDAAGAMQVAEKIRAGI 454 YGH AGD L+++A L+ RP DL+AR+GGEE ++LP T + GA+ +K+ A + Sbjct: 222 TYGHVAGDLVLKQVAKSLEASAMRPADLSARFGGEEFAIILPATGSNGAVISGKKVCAAV 281 Query: 455 QALDLPHRGNPAGVVTISAGVGALELLGPGARTLEDLLGQADIALYQAKHGGRNQV 510 +AL +PH G ++ VGA + + DL+ AD LY+AK G+++V Sbjct: 282 EALRIPHAHAAIG-EWLTVSVGAATITPQAEQVPNDLIELADKRLYRAKELGKHRV 336 >gi|152982609|ref|YP_001351719.1| hypothetical protein mma_0029 [Janthinobacterium sp. Marseille] Length = 313 Score = 141 bits (355), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 81/200 (40%), Positives = 115/200 (57%), Gaps = 13/200 (6%) Query: 315 LIGL---INLRLAAEDRALQVMGELHQANQQLELLAHQDGLTGLANRRHLDTVLAAEWRR 371 LIG IN R E + + + EL E L+ +DGLTG+ANRR D+VL EW Sbjct: 119 LIGFMFDINERKKTEAKLIDLQKEL-------ETLSFKDGLTGVANRRMFDSVLELEWAN 171 Query: 372 ALRSNAVLSLIMIDVDFFKQYNDLYGHQAGDECLRRIAAVLKERQRRPGDLAARYGGEEM 431 A+ S LS+I++D+D+FKQYND YGH GD CL+++A L R D R+GGEE Sbjct: 172 AMNSKRPLSIILLDIDYFKQYNDHYGHIQGDHCLKQVAKTLNNAAIRQRDFFGRFGGEEF 231 Query: 432 VMLLPDTDAAGAMQVAEKIRAGIQALDLPHRGNPAG-VVTISAGVGALELLGPGARTLED 490 +++LP+T+ A+ VAE+ R I +PH + ++TIS GV + + G L+ Sbjct: 232 ILILPETNEKSALTVAERCRMLIFKEQIPHEKSAVSQLLTISLGVHTV-IPSYGDEALK- 289 Query: 491 LLGQADIALYQAKHGGRNQV 510 + +AD LY AK GRN + Sbjct: 290 FIEEADRRLYLAKQKGRNCI 309 >gi|152982100|ref|YP_001354823.1| hypothetical protein mma_3133 [Janthinobacterium sp. Marseille] Length = 352 Score = 108 bits (271), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 69/173 (39%), Positives = 96/173 (55%), Gaps = 3/173 (1%) Query: 340 NQQLELLAHQDGLTGLANRRHLDTVLAAEWRRALRSNAVLSLIMIDVDFFKQYNDLYGHQ 399 N++L+ + D LTG+ NRR+++ L E R R LS + ID+D FK+ ND +GHQ Sbjct: 177 NERLQHIGLTDPLTGVNNRRYVERRLLEEVGRTQRHGYALSGMYIDLDHFKKVNDNFGHQ 236 Query: 400 AGDECLRRIAAVLKERQRRPGDLAARYGGEEMVMLLPDTDAAGAMQVAEKIRAGIQALDL 459 GDE L +A +K + R D R+GGEE V+LL D A+ VAE+IRA + + Sbjct: 237 GGDEVLCEVANRIKA-ELRLSDALGRFGGEEFVVLLIDAPLDAALVVAERIRASVSERPI 295 Query: 460 PHRGNPAGVVTISAGVGALELLG--PGARTLEDLLGQADIALYQAKHGGRNQV 510 T+S GV +L A + LL +AD+ALYQAK GRN+V Sbjct: 296 VLSSGEELRATVSIGVASLNTADRQDSAAVAQQLLAKADLALYQAKKEGRNKV 348 >gi|152982153|ref|YP_001353313.1| diguanylate cyclase [Janthinobacterium sp. Marseille] Length = 605 Score = 108 bits (270), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 67/177 (37%), Positives = 99/177 (55%), Gaps = 5/177 (2%) Query: 334 GELHQANQQLELLAHQDGLTGLANRRHLDTVLAAEWRRALRSNAVLSLIMIDVDFFKQYN 393 EL +A + E L+ D LTG NRR+ + V A E+ + R + LS+I D+D FKQ N Sbjct: 432 AELRKARDEAERLSRVDALTGAFNRRYFNEVAALEFAKVRRLHQPLSVISFDIDLFKQIN 491 Query: 394 DLYGHQAGDECLRRIAAVLKERQRRPGDLAARYGGEEMVMLLPDTDAAGAMQVAEKIRAG 453 D YGH AGDE + + AA + R D AR GGEE +LLP + A AE++R Sbjct: 492 DNYGHAAGDEVI-KAAARVSRNAVREIDFVARIGGEEFAILLPGSTIEQAAATAERLREL 550 Query: 454 IQALDLPHRGNPAGVVTISAGVGALELLGPGARTLEDLLGQADIALYQAKHGGRNQV 510 + A + ++G ++ +A G + L ++ E LL +AD +Y+AK+ GRN+V Sbjct: 551 VIAEQVSYQGK---LLAFTASFGVAQ-LKDSDQSFEALLQRADEMMYRAKNLGRNRV 603 >gi|152982523|ref|YP_001355121.1| diguanylate cyclase [Janthinobacterium sp. Marseille] Length = 408 Score = 106 bits (265), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 69/186 (37%), Positives = 101/186 (54%), Gaps = 10/186 (5%) Query: 328 RALQVMGELHQANQQLELL---AHQDGLTGLANRRHLDTVLAAEWRRALRSNAVLSLIMI 384 R Q+ L +A ++++ + A +D L G NRR++ L + R A S A L L +I Sbjct: 218 RMQQLHNALFKATRKIKDIEEDARRDVLLGCFNRRYIVAALEQQKRMADESGAPLCLAVI 277 Query: 385 DVDFFKQYNDLYGHQAGDECLRRIAAVLKERQRRPGDLAARYGGEEMVMLLPDTDAAGAM 444 D+D FK+ ND GH GDE LR A V E R D+ RYGGEE +++LP+T + A+ Sbjct: 278 DLDHFKRVNDEAGHLGGDEVLRTFARV-AESNVRKHDIFGRYGGEEFLLVLPETPLSAAL 336 Query: 445 QVAEKIRAGIQALDLPHRGNPAGVVTISAGVGALELLGPGARTLEDLLGQADIALYQAKH 504 ++E+IR I+ D +G VT+S G+ ++ DL + D A+Y AK Sbjct: 337 NISERIRTQIEQHDW--QGKLRNRVTVSIGLTQY----IAGESVLDLFSRTDTAMYMAKQ 390 Query: 505 GGRNQV 510 GRNQV Sbjct: 391 SGRNQV 396 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.136 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,193,379 Number of extensions: 49898 Number of successful extensions: 258 Number of sequences better than 1.0e-08: 28 Number of HSP's gapped: 210 Number of HSP's successfully gapped: 29 Length of query: 518 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 431 Effective length of database: 899,382 Effective search space: 387633642 Effective search space used: 387633642 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)