BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3452.p
         (301 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981429|ref|YP_001354273.1| transporter of the DMT superfam...   172   2e-44
gi|152981079|ref|YP_001355222.1| transporter of the DMT superfam...    84   1e-17

>gi|152981429|ref|YP_001354273.1| transporter of the DMT superfamily
           chloramphenicol-sensitivity protein (rarD family)
           [Janthinobacterium sp. Marseille]
          Length = 295

 Score =  172 bits (437), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 124/287 (43%), Positives = 180/287 (62%), Gaps = 4/287 (1%)

Query: 6   IGRGIGLSVLASSLFAFLSGYTRLLAPLDGTEIFAWRIVITLLCVLGLLAW-RGDLPRLR 64
           + +GI  SV +S LFA L  Y+ LLAPL+G EIF WR ++T    L L  W R     + 
Sbjct: 1   MSKGITFSVTSSILFAVLYYYSTLLAPLNGEEIFGWRTLLTF-PFLTLFIWSRRQQGLIL 59

Query: 65  SAMAELLGSPARIALLLLMTALLALQQWLFLWGSVNGRALEVSLGYFLLPLSMVLVGRFH 124
           + +  +  +PA I   L  +A L +Q WLF+W  ++GRAL VSLGYFLLPL+M++ GR  
Sbjct: 60  NLLHRMRQNPALILGALATSAFLGVQLWLFMWAPLHGRALNVSLGYFLLPLTMLMTGRII 119

Query: 125 YGEKMDLLQGLAVLCACVGVAHELWMTRAFSWPTLAVALGYPPYFILRRRIRIDSLLIFA 184
           Y E++  LQ LA +CA VGVA+EL    + SW T+ VALGYP YF+LRRR+  +++    
Sbjct: 120 YKERLSRLQNLAAMCAAVGVANELLQIGSLSWETMLVALGYPVYFVLRRRLGSNNIGGLW 179

Query: 185 VELMVLALPSLLALATSPRTVATLHT-PAMWLLLPGLGVLSMIALTSYLRAGKLLPMGLF 243
            +++ L    +  +      +A+L   P +++L+P LGVLS  AL  Y+ A + L + LF
Sbjct: 180 FDMVFLIPAGVWFVYAGDVGIASLSDFPRLYVLIPVLGVLSAFALLFYMIASQTLSLSLF 239

Query: 244 GILGYVEPVLLVLVAMAVLGETLHLAQLGTYVPIWLSVLLTALHSVK 290
           G+LGYVE  +L++V   +LGET+  A+  TY+PIW++VLL  +  VK
Sbjct: 240 GLLGYVE-PVLLVVVALLLGETIDGAEWLTYIPIWIAVLLLIVEGVK 285


>gi|152981079|ref|YP_001355222.1| transporter of the DMT superfamily
           chloramphenicol-sensitivity protein (rarD family)
           [Janthinobacterium sp. Marseille]
          Length = 296

 Score = 84.0 bits (206), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 80/281 (28%), Positives = 140/281 (49%), Gaps = 10/281 (3%)

Query: 26  YTRLLAPLDGTEIFAWRIVITLLCVLGLLAWRGDLPRLRSAMAELLGSPARIALLLLMTA 85
           Y + L  +   EI   R+V  L  +L +LA R    R  + ++ +L  P  +A       
Sbjct: 21  YFKSLHDIAPLEILLHRMVWALGFLLIVLAVR----RQWAWLSAVLRQPKVLAGFTASAL 76

Query: 86  LLALQQWLFLWGSVNGRALEVSLGYFLLPLSMVLVGRFHYGEKMDLLQGLAVLCACVGVA 145
           LL+   ++++W   + R ++ SLGYF+ PL  VL+G    GE++  LQ  AV  A +GVA
Sbjct: 77  LLSTNWFVYIWAVNHDRIIDASLGYFMTPLVNVLLGFLVLGERLRRLQWAAVFVAALGVA 136

Query: 146 HELWMTRAFSWPTLAVALGYPPYFILRRRIRIDSLLIFAVELMVLALPSLLALATSPRTV 205
              W      W  L + L +  Y +LR+  ++ +L   ++E ++L   ++LALA      
Sbjct: 137 WLTWENGHLPWIGLTLGLTFGTYGLLRKTAKLGALEGLSLETLLLFPLAVLALAVMAWNG 196

Query: 206 AT--LHTP--AMWLLLPGLGVLSMIALTSYLRAGKLLPMGLFGILGYVEPVLLVLVAMAV 261
           +   +H P  + WLL+   G ++ I L  +  A + +P+   G+L Y+ P L +LV + +
Sbjct: 197 SNSFIHAPTASQWLLVAA-GPITAIPLLLFATAARRIPLSTLGLLQYITPTLQLLVGVWL 255

Query: 262 LGETLHLAQLGTYVPIWLSVLLTALHSV-KLMRRPAVQPMN 301
             E    A+L  +  IW+++ L +   + +  R+PAV    
Sbjct: 256 YHEPFSSARLVGFAAIWIALGLYSADGLWQNYRQPAVDAQK 296


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.330    0.143    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 587,343
Number of extensions: 19907
Number of successful extensions: 111
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 2
Length of query: 301
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 218
Effective length of database: 914,170
Effective search space: 199289060
Effective search space used: 199289060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 129 (54.3 bits)