BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3449.p (646 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis pro... 336 3e-93 gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis pro... 334 1e-92 gi|152981384|ref|YP_001354274.1| methyl-accepting chemotaxis pro... 331 9e-92 gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis pro... 328 7e-91 gi|152982139|ref|YP_001353025.1| methyl-accepting chemotaxis I (... 325 7e-90 >gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 571 Score = 336 bits (861), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 209/401 (52%), Positives = 282/401 (70%), Gaps = 13/401 (3%) Query: 239 LPATVEAARVAAVADADEAFKLAENAIVRADQLTMPAPQWVATMTRIIDTQFVLVNASFE 298 LP + ++A+ DEA L A VR QL+ ++A++ ++ID Q L Sbjct: 124 LPLKDDFIKLASAGIKDEAVALL-FAEVRPAQLS-----YLASIDKLIDYQNEL------ 171 Query: 299 MMRDELQAKIPRLRNELIVLCLALAALALAALWVMVAITRATTAAIADAVRLTEAVSAGD 358 M + +A + +L++ ++ A+ +AA++ ++A TR+ T ++ AV L V+ GD Sbjct: 172 MKKSGAEANAKASQTQLLIGIFSIIAVLIAAVFAVLA-TRSITRPLSQAVVLARKVADGD 230 Query: 359 LTQHVEVKGSDEVARLLTAMQTMTAQLSKVVGSVRSNSESVATASAQIAQGNADLSKRTE 418 LT + V+ DE +LL A++ M L K+V VR ++++A+AS QIA GN DLS RTE Sbjct: 231 LTGSIVVESKDETGQLLQALKDMNEGLLKIVTQVRLGTDTIASASHQIATGNLDLSSRTE 290 Query: 419 EQASALQQTAASMEELGSTVQQNADGARQAGQLAREAADIASQGGAVVQQVVQTMQGIHA 478 +QAS+L++TA+SMEEL STV+QNA+ ARQ+ QLA A+++A +GGAVV +VV TM I+ Sbjct: 291 QQASSLEETASSMEELTSTVKQNAENARQSNQLALSASEVAVRGGAVVSKVVDTMGEIND 350 Query: 479 SSDRISDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSATAARE 538 S+ +I DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA+AA+E Sbjct: 351 SAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKE 410 Query: 539 IKELITASVDQVGQGTQLADQAGKTMEEIVSSIRRVSDIMVGINAATAEQNTGIAQVGQA 598 IKELI SVD+V G++L D AG TM E+V S++RV+DIM I AA+ EQ GI Q+ QA Sbjct: 411 IKELIGDSVDKVSIGSRLVDDAGATMREVVESVKRVTDIMSEITAASQEQTDGIEQINQA 470 Query: 599 VTQMDSTTQQNAALVEQSAAAAISLSGQARELVQAVAVFRV 639 V QMD TQQNAALVE++AAAA SL GQA L Q V VF++ Sbjct: 471 VMQMDQVTQQNAALVEEAAAAAESLQGQASHLSQVVGVFKL 511 >gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 334 bits (856), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 199/372 (53%), Positives = 258/372 (69%), Gaps = 20/372 (5%) Query: 284 RIIDTQFVLVNASF--------EMMRDELQAKIPRLRN-------ELIVLCLALAALALA 328 + DT F+ SF E+ R ++ A +L + +L++L + A + Sbjct: 147 KYFDTTFLPAADSFKNHFTEFVELERKQMDAGTAQLSDVEAASTRQLMLLSAMVLAFGIF 206 Query: 329 ALW-VMVAITRATTAAIADAVRLTEAVSAGDLTQHVEVKGSDEVARLLTAMQTMTAQLSK 387 W + + ITR A+ DA R V+ GDLT ++ + DE +LL A++ M L + Sbjct: 207 CAWRLTIGITRPLKTAV-DAAR---RVAGGDLTNDIKAESKDECGQLLAALKDMNDGLQR 262 Query: 388 VVGSVRSNSESVATASAQIAQGNADLSKRTEEQASALQQTAASMEELGSTVQQNADGARQ 447 +VG VR +E++ TAS +IA GN DLS RTE+QAS+L++TA+SMEEL STV+QNAD ARQ Sbjct: 263 IVGEVRLGTETITTASNEIAAGNLDLSSRTEQQASSLEETASSMEELTSTVKQNADNARQ 322 Query: 448 AGQLAREAADIASQGGAVVQQVVQTMQGIHASSDRISDIIGVIDGIAFQTNILALNAAVE 507 A QLA A+++A +GG VV QVVQTM I+ SS +I DII VIDGIAFQTNILALNAAVE Sbjct: 323 ANQLAVSASEVALKGGDVVSQVVQTMSSINESSRKIVDIISVIDGIAFQTNILALNAAVE 382 Query: 508 AARAGEQGRGFAVVATEVRSLAQRSATAAREIKELITASVDQVGQGTQLADQAGKTMEEI 567 AARAGEQGRGFAVVATEVRSLAQRSA+AA+EIK LI SV +V G +L +AG TM+EI Sbjct: 383 AARAGEQGRGFAVVATEVRSLAQRSASAAKEIKALIGDSVGKVDTGNKLVAEAGATMDEI 442 Query: 568 VSSIRRVSDIMVGINAATAEQNTGIAQVGQAVTQMDSTTQQNAALVEQSAAAAISLSGQA 627 V+SIRRV+DIM I AA+ EQ+ GI Q+ QA+ QMD TQQNA+LVE++AAAA S+ QA Sbjct: 443 VNSIRRVTDIMGEITAASQEQSAGIEQINQAIGQMDHVTQQNASLVEEAAAAAESMQDQA 502 Query: 628 RELVQAVAVFRV 639 R+L Q V F++ Sbjct: 503 RKLGQVVGAFKL 514 >gi|152981384|ref|YP_001354274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 568 Score = 331 bits (848), Expect = 9e-92, Method: Compositional matrix adjust. Identities = 199/328 (60%), Positives = 248/328 (75%), Gaps = 6/328 (1%) Query: 314 ELIVLCLALAALALAAL--WVMVAITRATTAAIADAVRLTEAVSAGDLTQHVEVKGSDEV 371 +++++ ALAA+ AL W IT + T + +AV++ + V+AGDLT +E K DE Sbjct: 190 QMMMVLGALAAVGGIALAYW----ITHSITKPLHEAVKIAQTVAAGDLTSVIEAKYKDET 245 Query: 372 ARLLTAMQTMTAQLSKVVGSVRSNSESVATASAQIAQGNADLSKRTEEQASALQQTAASM 431 +LL A++ M L ++VG VR ++E++A AS QIA GN DLS RTEEQAS+L++TA+SM Sbjct: 246 GQLLRALKDMNGSLIRIVGEVRHSTEAIAIASTQIASGNMDLSSRTEEQASSLEETASSM 305 Query: 432 EELGSTVQQNADGARQAGQLAREAADIASQGGAVVQQVVQTMQGIHASSDRISDIIGVID 491 EEL TV+QNAD ARQA QLA A+ +AS+GG VV QVV TM I+ S+ +I+DIIGVID Sbjct: 306 EELTGTVRQNADNARQANQLALTASSVASKGGDVVSQVVDTMGSINDSAKKIADIIGVID 365 Query: 492 GIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSATAAREIKELITASVDQVG 551 GIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRSA AA+EIK LI SV +V Sbjct: 366 GIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKEIKTLIGDSVQKVN 425 Query: 552 QGTQLADQAGKTMEEIVSSIRRVSDIMVGINAATAEQNTGIAQVGQAVTQMDSTTQQNAA 611 G++L D AG TM+E+V+S+RRV+DIM I AA+ EQ TGI Q+ QAV QMDS TQQNAA Sbjct: 426 AGSRLVDDAGSTMQEVVASVRRVTDIMGEITAASQEQTTGIEQINQAVIQMDSVTQQNAA 485 Query: 612 LVEQSAAAAISLSGQARELVQAVAVFRV 639 LVEQ+AAAA SL QA L Q V VF++ Sbjct: 486 LVEQAAAAAASLQHQAGSLAQVVGVFKL 513 >gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 328 bits (841), Expect = 7e-91, Method: Compositional matrix adjust. Identities = 193/330 (58%), Positives = 249/330 (75%), Gaps = 1/330 (0%) Query: 316 IVLCLALAALALAALWVMVAITRATTAAIADAVRLTEAVSAGDLTQHVEVKGSDEVARLL 375 +V L++ A+ ++A +A TR+ T ++ AV L V+ GDLT + V DE +LL Sbjct: 189 LVGILSVIAVIISAFLGFLA-TRSITRPLSQAVGLARKVADGDLTGTIVVTSKDETGQLL 247 Query: 376 TAMQTMTAQLSKVVGSVRSNSESVATASAQIAQGNADLSKRTEEQASALQQTAASMEELG 435 A+Q M L ++V VR ++++ATAS+QIA GN DLS RTEEQAS+L++TA+SMEEL Sbjct: 248 QALQDMNNGLVRIVTQVRMGTDTIATASSQIATGNLDLSSRTEEQASSLEETASSMEELT 307 Query: 436 STVQQNADGARQAGQLAREAADIASQGGAVVQQVVQTMQGIHASSDRISDIIGVIDGIAF 495 STV+QNAD ARQ+ QLA A+++A +GGAVV QVV+TM I+ S+++I DIIGVIDGIAF Sbjct: 308 STVKQNADNARQSNQLALTASEVAVRGGAVVSQVVETMGSINDSANKIVDIIGVIDGIAF 367 Query: 496 QTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSATAAREIKELITASVDQVGQGTQ 555 QTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA+AA+EIK LI SV++V G++ Sbjct: 368 QTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSASAAKEIKTLIDDSVEKVNNGSR 427 Query: 556 LADQAGKTMEEIVSSIRRVSDIMVGINAATAEQNTGIAQVGQAVTQMDSTTQQNAALVEQ 615 L AG TM E+V S+RRV+DIM I AA+ EQ GI Q+ QAV QMD TQQNAALVE+ Sbjct: 428 LVHDAGTTMAEVVESVRRVTDIMGEITAASQEQTDGIEQINQAVMQMDQVTQQNAALVEE 487 Query: 616 SAAAAISLSGQARELVQAVAVFRVASRALA 645 +AAAA SL QA L Q V+VF++ + A+A Sbjct: 488 AAAAAESLQDQANNLSQVVSVFKLDANAVA 517 >gi|152982139|ref|YP_001353025.1| methyl-accepting chemotaxis I (serine chemoreceptor protein) transmembrane protein [Janthinobacterium sp. Marseille] Length = 560 Score = 325 bits (832), Expect = 7e-90, Method: Compositional matrix adjust. Identities = 187/317 (58%), Positives = 241/317 (76%) Query: 327 LAALWVMVAITRATTAAIADAVRLTEAVSAGDLTQHVEVKGSDEVARLLTAMQTMTAQLS 386 L ++ + + I+R+ T + +AV + + V++GDLT + VK DE +LL A++ M L Sbjct: 197 LLSIGLGIVISRSITRPLNEAVLVAQTVASGDLTSQINVKSKDETGQLLQALKDMNQSLI 256 Query: 387 KVVGSVRSNSESVATASAQIAQGNADLSKRTEEQASALQQTAASMEELGSTVQQNADGAR 446 +V VRS + ++ATAS QIA GN DLS RTEEQAS+L++TA+SMEEL STV+QNAD AR Sbjct: 257 GIVDEVRSGTATMATASNQIASGNMDLSSRTEEQASSLEETASSMEELTSTVKQNADNAR 316 Query: 447 QAGQLAREAADIASQGGAVVQQVVQTMQGIHASSDRISDIIGVIDGIAFQTNILALNAAV 506 QA L+ A++IA +GG VV +VV TM GI+ S+ +I+DIIGVIDGIAFQTNILALNAAV Sbjct: 317 QANSLSLSASEIAVKGGQVVSEVVVTMNGINDSAKKITDIIGVIDGIAFQTNILALNAAV 376 Query: 507 EAARAGEQGRGFAVVATEVRSLAQRSATAAREIKELITASVDQVGQGTQLADQAGKTMEE 566 EAARAGEQGRGFAVVA+EVR+LAQRSA AA+EIK LI SV +V G++L QAG TM E Sbjct: 377 EAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKALIDDSVGRVDTGSKLVVQAGSTMTE 436 Query: 567 IVSSIRRVSDIMVGINAATAEQNTGIAQVGQAVTQMDSTTQQNAALVEQSAAAAISLSGQ 626 +V S++RV+DIM I AA+ EQ+ GI QV QA+ QMD TQQNAALVE++AAAA SL Q Sbjct: 437 VVDSVKRVTDIMAEIMAASQEQSAGIEQVNQAIAQMDHVTQQNAALVEEAAAAAGSLKDQ 496 Query: 627 ARELVQAVAVFRVASRA 643 A +L Q V+VF++ + A Sbjct: 497 AVKLEQTVSVFKIDASA 513 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.316 0.126 0.328 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,002,875 Number of extensions: 31361 Number of successful extensions: 312 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 230 Number of HSP's successfully gapped: 21 Length of query: 646 Length of database: 1,221,021 Length adjustment: 89 Effective length of query: 557 Effective length of database: 891,988 Effective search space: 496837316 Effective search space used: 496837316 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)