BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3445.p
         (208 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981789|ref|YP_001352259.1| homoserine/homoserine lactone e...    89   2e-19

>gi|152981789|ref|YP_001352259.1| homoserine/homoserine lactone
           efflux protein [Janthinobacterium sp. Marseille]
          Length = 214

 Score = 89.4 bits (220), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 109/211 (51%), Gaps = 7/211 (3%)

Query: 1   MPLDTLLLFVPSCFALNMAFGPNNLLSMTIGAQHGLRPALLAAAGRLVAFALMIAIAALG 60
           M L   L F+ +   + +  G   +LSM+ G  +G+R    +  G  +    ++ +A  G
Sbjct: 1   MTLSLWLTFLIAAILIAITPGSGAILSMSHGLSYGVRKTTASILGLQLGLIFLLTVAGAG 60

Query: 61  MGALLMASQIAFTVVKLLGAAYLVWLGCKIFFAKATVSAQ-GVELGRGGIRSFLRKEF-- 117
           +G+LL+AS++AF +VK +GA YL++LG   + AK  ++ +   +  R  + +F +K F  
Sbjct: 61  VGSLLLASEMAFNIVKTIGAFYLIYLGLSQWRAKVVLAPEMQAQHARTIVPTF-KKRFLH 119

Query: 118 --LVAIGNPKAILIFTAFFPQFVVPG-NYWGSFLLLGSIFLTLELVAIAAYAYAGTRLSG 174
             L  + NPK ++   A  PQF+V         L+LG     ++++ + AYA+A + +  
Sbjct: 120 GLLTNVTNPKGVIFMVAVLPQFIVKDAPLLPQLLILGVTICVIDIIVMHAYAFAASSMQR 179

Query: 175 LLQNARGLRWMNRISGGMMIVFGTILALARR 205
             ++A  ++  NR  G + I  GT L   +R
Sbjct: 180 FFRDATAVKKQNRFFGSLFIAIGTGLFFVKR 210


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.331    0.143    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 395,005
Number of extensions: 13960
Number of successful extensions: 65
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 1
Length of query: 208
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 129
Effective length of database: 928,958
Effective search space: 119835582
Effective search space used: 119835582
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 127 (53.5 bits)