BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3444.p (544 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis pro... 513 e-147 gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis pro... 503 e-143 gi|152981467|ref|YP_001352200.1| methyl-accepting chemotaxis pro... 479 e-136 gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis pro... 471 e-134 gi|152980488|ref|YP_001354515.1| methyl-accepting chemotaxis pro... 446 e-126 >gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 571 Score = 513 bits (1322), Expect = e-147, Method: Compositional matrix adjust. Identities = 295/540 (54%), Positives = 390/540 (72%), Gaps = 6/540 (1%) Query: 3 IADIKISVRLGACFSALILVMCVIATVGVKNLWAVTDVTDEIVNDRYVKVALVNQISEKV 62 + ++KI RL F ++++++ V+AT+ + + D E+ DRY K L N + + + Sbjct: 1 MKNLKIGQRLSLSFGSMVILLVVLATLAFTRIGGLNDAISEVDGDRYPKTVLANVMKDDL 60 Query: 63 NTAARAIRNAIIAPDEATMEKYLDRAVGNTREVSEHMADLEKIINTPKGSELFNKIKDAR 122 N AR +RNA++ ++A ++ L + T ++ + +LEK + + +G + ++ R Sbjct: 61 NQIARNMRNALLMTEKAAIQAELTQIGKATDSLNNALVELEKTVRSERGRQTIAGLQADR 120 Query: 123 ADYAKPRDGVIALIRAQKKAEAADYLFKEVIPAQDKYFAALKEMTAFQAGIMEKSVIKSR 182 + + +D I L A K EA LF EV PAQ Y A++ ++ +Q +M+KS ++ Sbjct: 121 SKFLPLKDDFIKLASAGIKDEAVALLFAEVRPAQLSYLASIDKLIDYQNELMKKSGAEAN 180 Query: 183 ETSADAVKLMVGLSSV-AILLSIMCAVMITRSITRPLNEAVEVASAVAAGDLTMQIAASS 241 A +L++G+ S+ A+L++ + AV+ TRSITRPL++AV +A VA GDLT I S Sbjct: 181 -AKASQTQLLIGIFSIIAVLIAAVFAVLATRSITRPLSQAVVLARKVADGDLTGSIVVES 239 Query: 242 KDETGALLSSLKVMNDNLHRIVTQVRQGTDTIATASGQIATGNLDLSSRTEQQAGALEET 301 KDETG LL +LK MN+ L +IVTQVR GTDTIA+AS QIATGNLDLSSRTEQQA +LEET Sbjct: 240 KDETGQLLQALKDMNEGLLKIVTQVRLGTDTIASASHQIATGNLDLSSRTEQQASSLEET 299 Query: 302 ASAMEELTSTVKQNADNARQANTLAANASQVAIQGGSVVGEVVHTMSEINEASRKIVEII 361 AS+MEELTSTVKQNA+NARQ+N LA +AS+VA++GG+VV +VV TM EIN++++KIV+II Sbjct: 300 ASSMEELTSTVKQNAENARQSNQLALSASEVAVRGGAVVSKVVDTMGEINDSAKKIVDII 359 Query: 362 TVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKSLIDTSV 421 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSA+AAKEIK LI SV Sbjct: 360 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKELIGDSV 419 Query: 422 ARVENGSRLVEQAGATMSEVVASVKRVTDVVAEITAASGEQSDGIEQINQAIVQMDEVTQ 481 +V GSRLV+ AGATM EVV SVKRVTD+++EITAAS EQ+DGIEQINQA++QMD+VTQ Sbjct: 420 DKVSIGSRLVDDAGATMREVVESVKRVTDIMSEITAASQEQTDGIEQINQAVMQMDQVTQ 479 Query: 482 QNAALVEEAAAAAQSLQEQSSRLSETVGIFKLGSGDFRHATAAAATMMRHTVDVTPHPAG 541 QNAALVEEAAAAA+SLQ Q+S LS+ VG+FKL H T + +T P AG Sbjct: 480 QNAALVEEAAAAAESLQGQASHLSQVVGVFKLDG----HGTTVVNAVPTYTAPEQPKVAG 535 >gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 503 bits (1295), Expect = e-143, Method: Compositional matrix adjust. Identities = 289/511 (56%), Positives = 372/511 (72%) Query: 3 IADIKISVRLGACFSALILVMCVIATVGVKNLWAVTDVTDEIVNDRYVKVALVNQISEKV 62 + ++KI RL F +++ V+ V+A + L + + NDRY K + I + + Sbjct: 1 MKNLKIGQRLALSFGSVVAVLIVLAVIAFTRLDKLDAAIGMVSNDRYPKTVNAHIIKDTL 60 Query: 63 NTAARAIRNAIIAPDEATMEKYLDRAVGNTREVSEHMADLEKIINTPKGSELFNKIKDAR 122 N AR +RNA++ D A ++ LD + ++E + L++ I + KG + DAR Sbjct: 61 NETARNMRNALLMTDAAQIKGELDTIEKGSVTIAEALDKLDRTIKSEKGRTYIKALTDAR 120 Query: 123 ADYAKPRDGVIALIRAQKKAEAADYLFKEVIPAQDKYFAALKEMTAFQAGIMEKSVIKSR 182 + +D +AL+ +AEA LF EV PAQ +Y L + FQ+ +M K+ + Sbjct: 121 GRFTPVKDKFVALVAQGMRAEAQILLFAEVRPAQLEYMLGLDRLVEFQSNLMHKAGEDAH 180 Query: 183 ETSADAVKLMVGLSSVAILLSIMCAVMITRSITRPLNEAVEVASAVAAGDLTMQIAASSK 242 E SA+A +L+ LS +A+++S + TRSITRPL++AV +A VA GDLT I +SK Sbjct: 181 EVSANAQQLVGILSVIAVIISAFLGFLATRSITRPLSQAVGLARKVADGDLTGTIVVTSK 240 Query: 243 DETGALLSSLKVMNDNLHRIVTQVRQGTDTIATASGQIATGNLDLSSRTEQQAGALEETA 302 DETG LL +L+ MN+ L RIVTQVR GTDTIATAS QIATGNLDLSSRTE+QA +LEETA Sbjct: 241 DETGQLLQALQDMNNGLVRIVTQVRMGTDTIATASSQIATGNLDLSSRTEEQASSLEETA 300 Query: 303 SAMEELTSTVKQNADNARQANTLAANASQVAIQGGSVVGEVVHTMSEINEASRKIVEIIT 362 S+MEELTSTVKQNADNARQ+N LA AS+VA++GG+VV +VV TM IN+++ KIV+II Sbjct: 301 SSMEELTSTVKQNADNARQSNQLALTASEVAVRGGAVVSQVVETMGSINDSANKIVDIIG 360 Query: 363 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKSLIDTSVA 422 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA+AAKEIK+LID SV Sbjct: 361 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSASAAKEIKTLIDDSVE 420 Query: 423 RVENGSRLVEQAGATMSEVVASVKRVTDVVAEITAASGEQSDGIEQINQAIVQMDEVTQQ 482 +V NGSRLV AG TM+EVV SV+RVTD++ EITAAS EQ+DGIEQINQA++QMD+VTQQ Sbjct: 421 KVNNGSRLVHDAGTTMAEVVESVRRVTDIMGEITAASQEQTDGIEQINQAVMQMDQVTQQ 480 Query: 483 NAALVEEAAAAAQSLQEQSSRLSETVGIFKL 513 NAALVEEAAAAA+SLQ+Q++ LS+ V +FKL Sbjct: 481 NAALVEEAAAAAESLQDQANNLSQVVSVFKL 511 >gi|152981467|ref|YP_001352200.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 542 Score = 479 bits (1233), Expect = e-136, Method: Compositional matrix adjust. Identities = 277/541 (51%), Positives = 364/541 (67%), Gaps = 3/541 (0%) Query: 3 IADIKISVRLGACFSALILVMCVIATVGVKNLWAVTDVTDEIVNDRYVKVALVNQISEKV 62 IA++KI +L F + ++ VI + L + + I DRY K L N + +V Sbjct: 4 IANMKIRQKLTLSFGVVFALLVVITLLSNIQLGQLNNSIKLISKDRYPKTILANSVQIEV 63 Query: 63 NTAARAIRNAIIAPDEATMEKYLDRAVGNTREVSEHMADLEKIINTPKGSELFNKIKDAR 122 N A +R+ +++ D A +++ + + ++++E + L + T + + + AR Sbjct: 64 NKIALNLRDIMLSSDPAKIKQLVSDTQASDKKMNEGLEQLRAVAQTEEDNRYVSAAIVAR 123 Query: 123 ADYAKPRDGVIALIRAQKKAEAADYLFKEVIPAQDKYFAALKEMTAFQAGIMEKSVIKSR 182 Y RD ++ L + K AEA YL + +P Q KYF AL M +Q +M + + Sbjct: 124 DQYVPARDTLLQLAQDGKTAEAKTYLDQVFMPVQVKYFIALDAMFDYQGSLMNVAGDAAS 183 Query: 183 ETSADAVKLMVGLSSVAILLSIMCAVMITRSITRPLNEAVEVASAVAAGDLTMQIAASSK 242 TS A ++ L+ +++LLSI +TRSITRPLN AV VA VA GDL+ + + Sbjct: 184 ATSVQARTIINILAGISLLLSIAVGWWVTRSITRPLNTAVGVARRVAQGDLSGPVFVKTT 243 Query: 243 DETGALLSSLKVMNDNLHRIVTQVRQGTDTIATASGQIATGNLDLSSRTEQQAGALEETA 302 +E G L+++LK MNDNLH IVTQVR GT TIA ASG+IA GN+DLSSRTEQQA +LEETA Sbjct: 244 NEVGQLMAALKTMNDNLHHIVTQVRNGTGTIANASGEIARGNMDLSSRTEQQASSLEETA 303 Query: 303 SAMEELTSTVKQNADNARQANTLAANASQVAIQGGSVVGEVVHTMSEINEASRKIVEIIT 362 SAMEELTSTV++NADNA+QAN LAA+A++VA QGGSVV EV+ TM+ IN +S+KI +I Sbjct: 304 SAMEELTSTVRENADNAQQANQLAASATKVARQGGSVVHEVIATMAAINTSSKKIADITG 363 Query: 363 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKSLIDTSVA 422 VID IAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA AA EIK+LID SVA Sbjct: 364 VIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSATAAMEIKALIDDSVA 423 Query: 423 RVENGSRLVEQAGATMSEVVASVKRVTDVVAEITAASGEQSDGIEQINQAIVQMDEVTQQ 482 +V+NGS+LV+QAG T+ EVV SV ++ +VA I+ AS EQS GIEQ+ QAIVQ+DE TQQ Sbjct: 424 KVDNGSKLVQQAGLTIDEVVTSVGSLSGIVAAISNASQEQSAGIEQVGQAIVQIDEGTQQ 483 Query: 483 NAALVEEAAAAAQSLQEQSSRLSETVGIFKLGSGDFRHATAAAATMMRHTVDVTPHPAGL 542 NAALVE++AAAAQSL+EQ+ +L + V IFKL + A AA + VT A L Sbjct: 484 NAALVEQSAAAAQSLREQADQLMQLVSIFKLDRQSVATSAAPAAGKLHL---VTTSTALL 540 Query: 543 P 543 P Sbjct: 541 P 541 >gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 471 bits (1213), Expect = e-134, Method: Compositional matrix adjust. Identities = 275/512 (53%), Positives = 356/512 (69%), Gaps = 2/512 (0%) Query: 3 IADIKISVRLGACFSALILVMCVIATVGVKNLWAVTDVTDEIVNDRYVKVALVNQISEKV 62 +++KI RL F ++ + IA G++ L AV+ +T ++ K +V+ + Sbjct: 4 FSNMKIGARLMLGFGVVLALSIAIAADGIRQLHAVSAITRSMLELPIAKERMVSDWAAIT 63 Query: 63 NTA-ARAIRNAIIAPDEATMEKYLDRAVGNTREVSEHMADLEKIINTPKGSELFNKIKDA 121 + AR I A A D A + A ++++ E + LE ++NT + EL+ KI D Sbjct: 64 KASIARTIGVAKSA-DPALAQFSAKFAADDSKQSMEIIQKLEPLLNTDQEKELYAKILDV 122 Query: 122 RADYAKPRDGVIALIRAQKKAEAADYLFKEVIPAQDKYFAALKEMTAFQAGIMEKSVIKS 181 R + R+GV+ L K+AEAA Y +PA D + E + M+ + Sbjct: 123 RKSFLAGREGVMKLKTEGKEAEAAKYFDTTFLPAADSFKNHFTEFVELERKQMDAGTAQL 182 Query: 182 RETSADAVKLMVGLSSVAILLSIMCAVMITRSITRPLNEAVEVASAVAAGDLTMQIAASS 241 + A + + ++ LS++ + I CA +T ITRPL AV+ A VA GDLT I A S Sbjct: 183 SDVEAASTRQLMLLSAMVLAFGIFCAWRLTIGITRPLKTAVDAARRVAGGDLTNDIKAES 242 Query: 242 KDETGALLSSLKVMNDNLHRIVTQVRQGTDTIATASGQIATGNLDLSSRTEQQAGALEET 301 KDE G LL++LK MND L RIV +VR GT+TI TAS +IA GNLDLSSRTEQQA +LEET Sbjct: 243 KDECGQLLAALKDMNDGLQRIVGEVRLGTETITTASNEIAAGNLDLSSRTEQQASSLEET 302 Query: 302 ASAMEELTSTVKQNADNARQANTLAANASQVAIQGGSVVGEVVHTMSEINEASRKIVEII 361 AS+MEELTSTVKQNADNARQAN LA +AS+VA++GG VV +VV TMS INE+SRKIV+II Sbjct: 303 ASSMEELTSTVKQNADNARQANQLAVSASEVALKGGDVVSQVVQTMSSINESSRKIVDII 362 Query: 362 TVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKSLIDTSV 421 +VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA+AAKEIK+LI SV Sbjct: 363 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSASAAKEIKALIGDSV 422 Query: 422 ARVENGSRLVEQAGATMSEVVASVKRVTDVVAEITAASGEQSDGIEQINQAIVQMDEVTQ 481 +V+ G++LV +AGATM E+V S++RVTD++ EITAAS EQS GIEQINQAI QMD VTQ Sbjct: 423 GKVDTGNKLVAEAGATMDEIVNSIRRVTDIMGEITAASQEQSAGIEQINQAIGQMDHVTQ 482 Query: 482 QNAALVEEAAAAAQSLQEQSSRLSETVGIFKL 513 QNA+LVEEAAAAA+S+Q+Q+ +L + VG FKL Sbjct: 483 QNASLVEEAAAAAESMQDQARKLGQVVGAFKL 514 >gi|152980488|ref|YP_001354515.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 567 Score = 446 bits (1148), Expect = e-126, Method: Compositional matrix adjust. Identities = 281/554 (50%), Positives = 372/554 (67%), Gaps = 25/554 (4%) Query: 1 MKIADIKISVRLGACFSALILVMCVIATVGVKNLWAVTDVTDEIVN-------DRYVKVA 53 MKI+++KI +RLG F+ ++L+M + VGV W + DV V+ +R Sbjct: 1 MKISNLKIGMRLGLAFAVILLLMASMIVVGV---WRLQDVAQATVHMEEAAHKERLTHEW 57 Query: 54 LVNQISEKVNTAARAIRNAIIAPDEATMEKYLDRAVG-NTREVSEHMADLEKIINTPKGS 112 + ++ + TAAR I ++A ++K + + ++E+S+ ++ +I++ +G Sbjct: 58 YLGNVANAIRTAAR------IRSNDAEIQKQFQKEMELQSQEISKLQNEIVALIHSEEGK 111 Query: 113 ELFNKIKDARADYAKPRDGVIAL---IRAQKKAEAADYLFKEVIPAQDKYFAALKEMTAF 169 +L + + + R Y R V L A A + ++ PA Y +++ + +F Sbjct: 112 KLMSVVGEKRTAYMDIRKDVFKLKAEANAAADLAATKLVETKMDPAMAAYNESVQAVVSF 171 Query: 170 QAGIMEKSVIKSRETSADAVKLMVGLSSVAILLSIMCAVMITRSITRPLNEAVEVASAVA 229 Q I +++ A +++ L S+A++LS A +++RSITRPL+ AV VA VA Sbjct: 172 QQVIFQRAKADVDALYASGRTILITLGSIALILSAFLAWLLSRSITRPLDYAVSVARTVA 231 Query: 230 AGDLTMQIAASSKDETGALLSSLKVMNDNLHRIVTQVRQGTDTIATASGQIATGNLDLSS 289 +GDL +I +SS DETG LL +L+ MND L + V+QVR G +TIATAS QIA GNLDLSS Sbjct: 232 SGDLRNKIQSSSNDETGQLLRALRDMNDGLVQSVSQVRTGIETIATASNQIAAGNLDLSS 291 Query: 290 RTEQQAGALEETASAMEELTSTVKQNADNARQANTLAANASQVAIQGGSVVGEVVHTMSE 349 RTE+QA +LEETAS+MEELTSTVKQNADNARQAN LA +AS VA +GG VV VV TM + Sbjct: 292 RTEEQASSLEETASSMEELTSTVKQNADNARQANQLAVSASGVAEKGGEVVSRVVDTMEQ 351 Query: 350 INEASRKIVEIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAA 409 IN +++KIV+II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSAAA Sbjct: 352 INASAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAA 411 Query: 410 AKEIKSLIDTSVARVENGSRLVEQAGATMSEVVASVKRVTDVVAEITAASGEQSDGIEQI 469 AKEIK+LI SV +VE GS+LV +AG TM EVV SVK VTD+++EI AAS EQS GIEQ+ Sbjct: 412 AKEIKTLIGDSVDKVELGSKLVGEAGVTMDEVVQSVKHVTDIMSEIMAASQEQSAGIEQV 471 Query: 470 NQAIVQMDEVTQQNAALVEEAAAAAQSLQEQSSRLSETVGIFKLGSGDFRHATAAAATMM 529 NQAI QMD+VTQQNAALVEEAAAAA+SL EQ+++L+E V +FKL S TAAAA Sbjct: 472 NQAIGQMDQVTQQNAALVEEAAAAAESLNEQAAKLAEAVSVFKLDS-----ITAAAAPSK 526 Query: 530 RHTVDVTPHPAGLP 543 + V G P Sbjct: 527 KVNVGTRVASHGAP 540 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.313 0.125 0.321 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 856,274 Number of extensions: 27432 Number of successful extensions: 231 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 155 Number of HSP's successfully gapped: 21 Length of query: 544 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 456 Effective length of database: 895,685 Effective search space: 408432360 Effective search space used: 408432360 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 132 (55.5 bits)