BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3443.p (542 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982139|ref|YP_001353025.1| methyl-accepting chemotaxis I (... 533 e-152 gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis pro... 380 e-107 gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis pro... 380 e-106 gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis pro... 373 e-104 gi|152981467|ref|YP_001352200.1| methyl-accepting chemotaxis pro... 366 e-102 >gi|152982139|ref|YP_001353025.1| methyl-accepting chemotaxis I (serine chemoreceptor protein) transmembrane protein [Janthinobacterium sp. Marseille] Length = 560 Score = 533 bits (1372), Expect = e-152, Method: Compositional matrix adjust. Identities = 307/540 (56%), Positives = 383/540 (70%), Gaps = 6/540 (1%) Query: 4 FRSMKIGTKLLLAFAVSLLLTVILAAISLTSINSLTASIKAADTVQEQRLSPLYFAREAL 63 F +MK+G+KL L F V+ LLT+++A +L IN + I + ++ Q+L LY AREAL Sbjct: 2 FANMKVGSKLSLGFGVTALLTLLIAVFALMRINQIDGVIATQNEIRTQQLERLYTAREAL 61 Query: 64 DQTGIAARNAYVFRSDSDAQKELAIVDEQKQLYLKALRDMESTFAGNKNFETVRAGLLKM 123 QTG+AARNAY+F + +DA KEL I+DEQK +YL AL M F G+ NFE V GLL M Sbjct: 62 GQTGLAARNAYIFTNKADALKELDILDEQKAIYLDALAKMTPFFKGDANFEKVSKGLLTM 121 Query: 124 ADELKRPRQYREGGKMEEYRDFLVNECSPLRRQIVLDINKVIDEVSAENDKARQTTNDMA 183 A+ELKRPRQ+R+ +ME + FLVNECSPLRRQIV DI V+ + D Q N A Sbjct: 122 AEELKRPRQFRDADQMEAFGKFLVNECSPLRRQIVADIGTVVTSMQKIVDVKSQEANLAA 181 Query: 184 SRASIIVAVLTIIVAIISVLIAFVITRGLLKQLGGEPAYAAQIAQQIAAGDLTSDVQTKL 243 ++ I+ ++ + ++S+ + VI+R + + L A +AQ +A+GDLTS + K Sbjct: 182 QQSITIIIAISAVALLLSIGLGIVISRSITRPLN----EAVLVAQTVASGDLTSQINVKS 237 Query: 244 GDTTS-LLFAIKQMRDSLVAIVGKVREGTHTIEQASAEIASGNMDLSSRTEQQAGALEET 302 D T LL A+K M SL+ IV +VR GT T+ AS +IASGNMDLSSRTE+QA +LEET Sbjct: 238 KDETGQLLQALKDMNQSLIGIVDEVRSGTATMATASNQIASGNMDLSSRTEEQASSLEET 297 Query: 303 ASAMEELMSTVKQNADNAKQASQLAVSASEVASQGGEVVGKVVTTMEGINTSSRKIVDII 362 AS+MEEL STVKQNADNA+QA+ L++SASE+A +GG+VV +VV TM GIN S++KI DII Sbjct: 298 ASSMEELTSTVKQNADNARQANSLSLSASEIAVKGGQVVSEVVVTMNGINDSAKKITDII 357 Query: 363 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSATAAKEITGLINDSV 422 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSA AAKEI LI+DSV Sbjct: 358 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKALIDDSV 417 Query: 423 AQIEQGSSLVEQAGQTMENVVSSVKRVTDVVAEISYASQEQSNGISQINVSITHMDEATQ 482 +++ GS LV QAG TM VV SVKRVTD++AEI ASQEQS GI Q+N +I MD TQ Sbjct: 418 GRVDTGSKLVVQAGSTMTEVVDSVKRVTDIMAEIMAASQEQSAGIEQVNQAIAQMDHVTQ 477 Query: 483 QNAALVEEAAAAANAMTEQASALSGLVSTFQLEASVTPSITMAVGERSRKTFTGKALALK 542 QNAALVEEAAAAA ++ +QA L VS F+++AS P T R T ALA K Sbjct: 478 QNAALVEEAAAAAGSLKDQAVKLEQTVSVFKIDAS-APQQTEHQDTSVRSTPVRPALASK 536 >gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 571 Score = 380 bits (977), Expect = e-107, Method: Compositional matrix adjust. Identities = 246/523 (47%), Positives = 336/523 (64%), Gaps = 14/523 (2%) Query: 4 FRSMKIGTKLLLAFAVSLLLTVILAAISLTSINSLTASIKAADTVQEQRLSPLYFAREAL 63 +++KIG +L L+F ++L V+LA ++ T I L +I D + + ++ L Sbjct: 1 MKNLKIGQRLSLSFGSMVILLVVLATLAFTRIGGLNDAISEVDGDRYPKTVLANVMKDDL 60 Query: 64 DQTGIAARNAYVFRSDSDAQKELAIVDEQKQLYLKALRDMESTFAGNKNFETV------R 117 +Q RNA + + Q EL + + AL ++E T + +T+ R Sbjct: 61 NQIARNMRNALLMTEKAAIQAELTQIGKATDSLNNALVELEKTVRSERGRQTIAGLQADR 120 Query: 118 AGLLKMADELKRPRQYREGGKMEEYRDFLVNECSPLRRQIVLDINKVIDEVSAENDKARQ 177 + L + D+ + G +E L E P + + I+K+ID + K+ Sbjct: 121 SKFLPLKDDFIK---LASAGIKDEAVALLFAEVRPAQLSYLASIDKLIDYQNELMKKSGA 177 Query: 178 TTNDMASRASIIVAVLTIIVAIISVLIAFVITRGLLKQLGGEPAYAAQIAQQIAAGDLTS 237 N AS+ +++ + +II +I+ + A + TR + + L + A +A+++A GDLT Sbjct: 178 EANAKASQTQLLIGIFSIIAVLIAAVFAVLATRSITRPL----SQAVVLARKVADGDLTG 233 Query: 238 DVQTKLGDTTS-LLFAIKQMRDSLVAIVGKVREGTHTIEQASAEIASGNMDLSSRTEQQA 296 + + D T LL A+K M + L+ IV +VR GT TI AS +IA+GN+DLSSRTEQQA Sbjct: 234 SIVVESKDETGQLLQALKDMNEGLLKIVTQVRLGTDTIASASHQIATGNLDLSSRTEQQA 293 Query: 297 GALEETASAMEELMSTVKQNADNAKQASQLAVSASEVASQGGEVVGKVVTTMEGINTSSR 356 +LEETAS+MEEL STVKQNA+NA+Q++QLA+SASEVA +GG VV KVV TM IN S++ Sbjct: 294 SSLEETASSMEELTSTVKQNAENARQSNQLALSASEVAVRGGAVVSKVVDTMGEINDSAK 353 Query: 357 KIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSATAAKEITG 416 KIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA+AAKEI Sbjct: 354 KIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKE 413 Query: 417 LINDSVAQIEQGSSLVEQAGQTMENVVSSVKRVTDVVAEISYASQEQSNGISQINVSITH 476 LI DSV ++ GS LV+ AG TM VV SVKRVTD+++EI+ ASQEQ++GI QIN ++ Sbjct: 414 LIGDSVDKVSIGSRLVDDAGATMREVVESVKRVTDIMSEITAASQEQTDGIEQINQAVMQ 473 Query: 477 MDEATQQNAALVEEAAAAANAMTEQASALSGLVSTFQLEASVT 519 MD+ TQQNAALVEEAAAAA ++ QAS LS +V F+L+ T Sbjct: 474 MDQVTQQNAALVEEAAAAAESLQGQASHLSQVVGVFKLDGHGT 516 >gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 380 bits (976), Expect = e-106, Method: Compositional matrix adjust. Identities = 248/534 (46%), Positives = 343/534 (64%), Gaps = 44/534 (8%) Query: 4 FRSMKIGTKLLLAFAVSLLLTVILAAIS---LTSINSLTASIKAADTVQEQRLSPLY-FA 59 F +MKIG +L+L F V L L++ +AA L +++++T S+ +E+ +S Sbjct: 4 FSNMKIGARLMLGFGVVLALSIAIAADGIRQLHAVSAITRSMLELPIAKERMVSDWAAIT 63 Query: 60 REALDQT-GIA-------ARNAYVFRSDSDAQKELAIV---------DEQKQLYLKALRD 102 + ++ +T G+A A+ + F +D D+++ + I+ D++K+LY K L Sbjct: 64 KASIARTIGVAKSADPALAQFSAKFAAD-DSKQSMEIIQKLEPLLNTDQEKELYAKILDV 122 Query: 103 MESTFAGNKNFETVRAGLLKMADELKRPRQYREGGKMEEYRDFLVNECSPLRRQIVLDIN 162 +S AG R G++K+ E GK E + P Sbjct: 123 RKSFLAG-------REGVMKLKTE----------GKEAEAAKYFDTTFLPAADSFKNHFT 165 Query: 163 KVIDEVSAENDKARQTTNDMASRASIIVAVLTIIVAIISVLIAFVITRGLLKQLGGEPAY 222 + ++ + D +D+ + ++ + +L+ +V + A+ +T G+ + L Sbjct: 166 EFVELERKQMDAGTAQLSDVEAASTRQLMLLSAMVLAFGIFCAWRLTIGITRPL----KT 221 Query: 223 AAQIAQQIAAGDLTSDVQTKLGDTTS-LLFAIKQMRDSLVAIVGKVREGTHTIEQASAEI 281 A A+++A GDLT+D++ + D LL A+K M D L IVG+VR GT TI AS EI Sbjct: 222 AVDAARRVAGGDLTNDIKAESKDECGQLLAALKDMNDGLQRIVGEVRLGTETITTASNEI 281 Query: 282 ASGNMDLSSRTEQQAGALEETASAMEELMSTVKQNADNAKQASQLAVSASEVASQGGEVV 341 A+GN+DLSSRTEQQA +LEETAS+MEEL STVKQNADNA+QA+QLAVSASEVA +GG+VV Sbjct: 282 AAGNLDLSSRTEQQASSLEETASSMEELTSTVKQNADNARQANQLAVSASEVALKGGDVV 341 Query: 342 GKVVTTMEGINTSSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR 401 +VV TM IN SSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR Sbjct: 342 SQVVQTMSSINESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVR 401 Query: 402 NLAQRSATAAKEITGLINDSVAQIEQGSSLVEQAGQTMENVVSSVKRVTDVVAEISYASQ 461 +LAQRSA+AAKEI LI DSV +++ G+ LV +AG TM+ +V+S++RVTD++ EI+ ASQ Sbjct: 402 SLAQRSASAAKEIKALIGDSVGKVDTGNKLVAEAGATMDEIVNSIRRVTDIMGEITAASQ 461 Query: 462 EQSNGISQINVSITHMDEATQQNAALVEEAAAAANAMTEQASALSGLVSTFQLE 515 EQS GI QIN +I MD TQQNA+LVEEAAAAA +M +QA L +V F+L+ Sbjct: 462 EQSAGIEQINQAIGQMDHVTQQNASLVEEAAAAAESMQDQARKLGQVVGAFKLD 515 >gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 373 bits (958), Expect = e-104, Method: Compositional matrix adjust. Identities = 241/522 (46%), Positives = 345/522 (66%), Gaps = 16/522 (3%) Query: 4 FRSMKIGTKLLLAFAVSLLLTVILAAISLTSINSLTASIKAADTVQEQRLSPLYFAREAL 63 +++KIG +L L+F + + ++LA I+ T ++ L A+I + + + ++ L Sbjct: 1 MKNLKIGQRLALSFGSVVAVLIVLAVIAFTRLDKLDAAIGMVSNDRYPKTVNAHIIKDTL 60 Query: 64 DQTGIAARNAYVFRSDSDAQKELAIVDEQKQLYLKALRDMESTFAGNKNFETVRAGLLKM 123 ++T RNA + + + EL +++ +AL ++ T K ++A + Sbjct: 61 NETARNMRNALLMTDAAQIKGELDTIEKGSVTIAEALDKLDRTIKSEKGRTYIKA----L 116 Query: 124 ADELKRPRQYREG-------GKMEEYRDFLVNECSPLRRQIVLDINKVIDEVSAENDKAR 176 D R ++ G E + L E P + + +L ++++++ S KA Sbjct: 117 TDARGRFTPVKDKFVALVAQGMRAEAQILLFAEVRPAQLEYMLGLDRLVEFQSNLMHKAG 176 Query: 177 QTTNDMASRASIIVAVLTIIVAIISVLIAFVITRGLLKQLGGEPAYAAQIAQQIAAGDLT 236 + +++++ A +V +L++I IIS + F+ TR + + L + A +A+++A GDLT Sbjct: 177 EDAHEVSANAQQLVGILSVIAVIISAFLGFLATRSITRPL----SQAVGLARKVADGDLT 232 Query: 237 SD-VQTKLGDTTSLLFAIKQMRDSLVAIVGKVREGTHTIEQASAEIASGNMDLSSRTEQQ 295 V T +T LL A++ M + LV IV +VR GT TI AS++IA+GN+DLSSRTE+Q Sbjct: 233 GTIVVTSKDETGQLLQALQDMNNGLVRIVTQVRMGTDTIATASSQIATGNLDLSSRTEEQ 292 Query: 296 AGALEETASAMEELMSTVKQNADNAKQASQLAVSASEVASQGGEVVGKVVTTMEGINTSS 355 A +LEETAS+MEEL STVKQNADNA+Q++QLA++ASEVA +GG VV +VV TM IN S+ Sbjct: 293 ASSLEETASSMEELTSTVKQNADNARQSNQLALTASEVAVRGGAVVSQVVETMGSINDSA 352 Query: 356 RKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSATAAKEIT 415 KIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSA+AAKEI Sbjct: 353 NKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSASAAKEIK 412 Query: 416 GLINDSVAQIEQGSSLVEQAGQTMENVVSSVKRVTDVVAEISYASQEQSNGISQINVSIT 475 LI+DSV ++ GS LV AG TM VV SV+RVTD++ EI+ ASQEQ++GI QIN ++ Sbjct: 413 TLIDDSVEKVNNGSRLVHDAGTTMAEVVESVRRVTDIMGEITAASQEQTDGIEQINQAVM 472 Query: 476 HMDEATQQNAALVEEAAAAANAMTEQASALSGLVSTFQLEAS 517 MD+ TQQNAALVEEAAAAA ++ +QA+ LS +VS F+L+A+ Sbjct: 473 QMDQVTQQNAALVEEAAAAAESLQDQANNLSQVVSVFKLDAN 514 >gi|152981467|ref|YP_001352200.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 542 Score = 366 bits (940), Expect = e-102, Method: Compositional matrix adjust. Identities = 244/546 (44%), Positives = 328/546 (60%), Gaps = 35/546 (6%) Query: 1 MNAFRSMKIGTKLLLAFAVSLLLTVILAAISLTSINSLTASIKAADTVQEQRLSPLYFAR 60 M +MKI KL L+F V L V++ +S + L SIK + + R A Sbjct: 1 MKMIANMKIRQKLTLSFGVVFALLVVITLLSNIQLGQLNNSIK---LISKDRYPKTILAN 57 Query: 61 EALDQTGIAARNAYVFRSDSDAQKELAIV------DEQKQLYLKALRDMESTFAGNK--- 111 + A N SD K +V D++ L+ LR + T N+ Sbjct: 58 SVQIEVNKIALNLRDIMLSSDPAKIKQLVSDTQASDKKMNEGLEQLRAVAQTEEDNRYVS 117 Query: 112 -------NFETVRAGLLKMADELKRPRQYREGGKMEEYRDFLVNECSPLRRQIVLDINKV 164 + R LL++A + GK E + +L P++ + + ++ + Sbjct: 118 AAIVARDQYVPARDTLLQLAQD----------GKTAEAKTYLDQVFMPVQVKYFIALDAM 167 Query: 165 IDEVSAENDKARQTTNDMASRASIIVAVLTIIVAIISVLIAFVITRGLLKQLGGEPAYAA 224 D + + A + + +A I+ +L I ++S+ + + +TR + + L A Sbjct: 168 FDYQGSLMNVAGDAASATSVQARTIINILAGISLLLSIAVGWWVTRSITRPLN----TAV 223 Query: 225 QIAQQIAAGDLTSDVQTKL-GDTTSLLFAIKQMRDSLVAIVGKVREGTHTIEQASAEIAS 283 +A+++A GDL+ V K + L+ A+K M D+L IV +VR GT TI AS EIA Sbjct: 224 GVARRVAQGDLSGPVFVKTTNEVGQLMAALKTMNDNLHHIVTQVRNGTGTIANASGEIAR 283 Query: 284 GNMDLSSRTEQQAGALEETASAMEELMSTVKQNADNAKQASQLAVSASEVASQGGEVVGK 343 GNMDLSSRTEQQA +LEETASAMEEL STV++NADNA+QA+QLA SA++VA QGG VV + Sbjct: 284 GNMDLSSRTEQQASSLEETASAMEELTSTVRENADNAQQANQLAASATKVARQGGSVVHE 343 Query: 344 VVTTMEGINTSSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNL 403 V+ TM INTSS+KI DI VID IAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNL Sbjct: 344 VIATMAAINTSSKKIADITGVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNL 403 Query: 404 AQRSATAAKEITGLINDSVAQIEQGSSLVEQAGQTMENVVSSVKRVTDVVAEISYASQEQ 463 AQRSATAA EI LI+DSVA+++ GS LV+QAG T++ VV+SV ++ +VA IS ASQEQ Sbjct: 404 AQRSATAAMEIKALIDDSVAKVDNGSKLVQQAGLTIDEVVTSVGSLSGIVAAISNASQEQ 463 Query: 464 SNGISQINVSITHMDEATQQNAALVEEAAAAANAMTEQASALSGLVSTFQLE-ASVTPSI 522 S GI Q+ +I +DE TQQNAALVE++AAAA ++ EQA L LVS F+L+ SV S Sbjct: 464 SAGIEQVGQAIVQIDEGTQQNAALVEQSAAAAQSLREQADQLMQLVSIFKLDRQSVATSA 523 Query: 523 TMAVGE 528 A G+ Sbjct: 524 APAAGK 529 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.313 0.125 0.314 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 803,982 Number of extensions: 24788 Number of successful extensions: 229 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 142 Number of HSP's successfully gapped: 21 Length of query: 542 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 454 Effective length of database: 895,685 Effective search space: 406640990 Effective search space used: 406640990 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 132 (55.5 bits)