BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3439.p (582 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis pro... 451 e-128 gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis pro... 440 e-124 gi|152981467|ref|YP_001352200.1| methyl-accepting chemotaxis pro... 433 e-122 gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis tra... 414 e-117 gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis pro... 407 e-115 >gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 571 Score = 451 bits (1159), Expect = e-128, Method: Compositional matrix adjust. Identities = 275/581 (47%), Positives = 378/581 (65%), Gaps = 11/581 (1%) Query: 3 FNNFSIATRLAIAFSVLILAIATIVTLGLIRLGDINEAINLVVNDRYKKIALINTIAGKM 62 N I RL+++F +++ + + TL R+G +N+AI+ V DRY K L N + + Sbjct: 1 MKNLKIGQRLSLSFGSMVILLVVLATLAFTRIGGLNDAISEVDGDRYPKTVLANVMKDDL 60 Query: 63 DDVAISVRNQLLTSDPGQAAREQANTKELASQVAAHFQELETFLIDPAARAQFAKVMTAR 122 + +A ++RN LL ++ E + + ELE + R A + R Sbjct: 61 NQIARNMRNALLMTEKAAIQAELTQIGKATDSLNNALVELEKTVRSERGRQTIAGLQADR 120 Query: 123 DQYTSLRTQIEELNAKGQRETAVELLVVKLTSLQKAYFGELEAFSNMQKKLMDQSVEDAE 182 ++ L+ +L + G ++ AV LL ++ Q +Y ++ + Q +LM +S +A Sbjct: 121 SKFLPLKDDFIKLASAGIKDEAVALLFAEVRPAQLSYLASIDKLIDYQNELMKKSGAEAN 180 Query: 183 AAYNTTRLIMLGSGLLSTLFASLIAWTISRSITRPLSRAVEVAETVAAGDLTAVITAHST 242 A + T+L++ +++ L A++ A +RSITRPLS+AV +A VA GDLT I S Sbjct: 181 AKASQTQLLIGIFSIIAVLIAAVFAVLATRSITRPLSQAVVLARKVADGDLTGSIVVESK 240 Query: 243 DETGRLLQALAAMNQKLKAIVLEVRHSTDSMVAASTQIATGNLDLSSRTEEQASALEETA 302 DETG+LLQAL MN+ L IV +VR TD++ +AS QIATGNLDLSSRTE+QAS+LEETA Sbjct: 241 DETGQLLQALKDMNEGLLKIVTQVRLGTDTIASASHQIATGNLDLSSRTEQQASSLEETA 300 Query: 303 SSLEQLTSSVKQNADHTRKSSELAGTATAVANQGGEAVKQVVQTMGAINDSSRKIVDIIS 362 SS+E+LTS+VKQNA++ R+S++LA +A+ VA +GG V +VV TMG INDS++KIVDII Sbjct: 301 SSMEELTSTVKQNAENARQSNQLALSASEVAVRGGAVVSKVVDTMGEINDSAKKIVDIIG 360 Query: 363 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSATAAKEIKELINDSVN 422 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA+AAKEIKELI DSV+ Sbjct: 361 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKELIGDSVD 420 Query: 423 QVSSGTELVAQAGNTMDQVVSSIEQVGHIVSEISSATHEQSEGIEQVNQAIMQMDNTTQQ 482 +VS G+ LV AG TM +VV S+++V I+SEI++A+ EQ++GIEQ+NQA+MQMD TQQ Sbjct: 421 KVSIGSRLVDDAGATMREVVESVKRVTDIMSEITAASQEQTDGIEQINQAVMQMDQVTQQ 480 Query: 483 NAALVEEAAAAAQALQDQAQRLLELVSVFRLDEAGGPELRTMQMPQAASLKSSAVTSKAL 542 NAALVEEAAAAA++LQ QA L ++V VF+LD G + +P + + V KA Sbjct: 481 NAALVEEAAAAAESLQGQASHLSQVVGVFKLDGHGTTVVNA--VPTYTAPEQPKVAGKAA 538 Query: 543 PSKQQTQPQSARPAAIGANQAPR-ALPNSIKDDKKEEWESF 582 K +T Q + PR +P +EWE F Sbjct: 539 LHKVKTTQQKIEDKEFA--RVPRNVVPAG------DEWEQF 571 >gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 440 bits (1132), Expect = e-124, Method: Compositional matrix adjust. Identities = 263/513 (51%), Positives = 354/513 (69%), Gaps = 2/513 (0%) Query: 3 FNNFSIATRLAIAFSVLILAIATIVTLGLIRLGDINEAINLVVNDRYKKIALINTIAGKM 62 N I RLA++F ++ + + + RL ++ AI +V NDRY K + I + Sbjct: 1 MKNLKIGQRLALSFGSVVAVLIVLAVIAFTRLDKLDAAIGMVSNDRYPKTVNAHIIKDTL 60 Query: 63 DDVAISVRNQLLTSDPGQAAREQANTKELASQVAAHFQELETFLIDPAARAQFAKVMTAR 122 ++ A ++RN LL +D Q E ++ + +A +L+ + R + AR Sbjct: 61 NETARNMRNALLMTDAAQIKGELDTIEKGSVTIAEALDKLDRTIKSEKGRTYIKALTDAR 120 Query: 123 DQYTSLRTQIEELNAKGQRETAVELLVVKLTSLQKAYFGELEAFSNMQKKLMDQSVEDA- 181 ++T ++ + L A+G R A LL ++ Q Y L+ Q LM ++ EDA Sbjct: 121 GRFTPVKDKFVALVAQGMRAEAQILLFAEVRPAQLEYMLGLDRLVEFQSNLMHKAGEDAH 180 Query: 182 EAAYNTTRLIMLGSGLLSTLFASLIAWTISRSITRPLSRAVEVAETVAAGDLTAVITAHS 241 E + N +L+ + S +++ + ++ + + +RSITRPLS+AV +A VA GDLT I S Sbjct: 181 EVSANAQQLVGILS-VIAVIISAFLGFLATRSITRPLSQAVGLARKVADGDLTGTIVVTS 239 Query: 242 TDETGRLLQALAAMNQKLKAIVLEVRHSTDSMVAASTQIATGNLDLSSRTEEQASALEET 301 DETG+LLQAL MN L IV +VR TD++ AS+QIATGNLDLSSRTEEQAS+LEET Sbjct: 240 KDETGQLLQALQDMNNGLVRIVTQVRMGTDTIATASSQIATGNLDLSSRTEEQASSLEET 299 Query: 302 ASSLEQLTSSVKQNADHTRKSSELAGTATAVANQGGEAVKQVVQTMGAINDSSRKIVDII 361 ASS+E+LTS+VKQNAD+ R+S++LA TA+ VA +GG V QVV+TMG+INDS+ KIVDII Sbjct: 300 ASSMEELTSTVKQNADNARQSNQLALTASEVAVRGGAVVSQVVETMGSINDSANKIVDII 359 Query: 362 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSATAAKEIKELINDSV 421 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA+AAKEIK LI+DSV Sbjct: 360 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSASAAKEIKTLIDDSV 419 Query: 422 NQVSSGTELVAQAGNTMDQVVSSIEQVGHIVSEISSATHEQSEGIEQVNQAIMQMDNTTQ 481 +V++G+ LV AG TM +VV S+ +V I+ EI++A+ EQ++GIEQ+NQA+MQMD TQ Sbjct: 420 EKVNNGSRLVHDAGTTMAEVVESVRRVTDIMGEITAASQEQTDGIEQINQAVMQMDQVTQ 479 Query: 482 QNAALVEEAAAAAQALQDQAQRLLELVSVFRLD 514 QNAALVEEAAAAA++LQDQA L ++VSVF+LD Sbjct: 480 QNAALVEEAAAAAESLQDQANNLSQVVSVFKLD 512 >gi|152981467|ref|YP_001352200.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 542 Score = 433 bits (1113), Expect = e-122, Method: Compositional matrix adjust. Identities = 255/547 (46%), Positives = 357/547 (65%), Gaps = 17/547 (3%) Query: 5 NFSIATRLAIAFSVLILAIATIVTLGLIRLGDINEAINLVVNDRYKKIALINTIAGKMDD 64 N I +L ++F V+ + I L I+LG +N +I L+ DRY K L N++ +++ Sbjct: 6 NMKIRQKLTLSFGVVFALLVVITLLSNIQLGQLNNSIKLISKDRYPKTILANSVQIEVNK 65 Query: 65 VAISVRNQLLTSDPGQAAREQANTKELASQVAAHFQELETFLIDPAARAQ-------FAK 117 +A+++R+ +L+SDP A K+L S A +++ L A AQ + Sbjct: 66 IALNLRDIMLSSDP-------AKIKQLVSDTQASDKKMNEGLEQLRAVAQTEEDNRYVSA 118 Query: 118 VMTARDQYTSLRTQIEELNAKGQRETAVELLVVKLTSLQKAYFGELEAFSNMQKKLMDQS 177 + ARDQY R + +L G+ A L +Q YF L+A + Q LM+ + Sbjct: 119 AIVARDQYVPARDTLLQLAQDGKTAEAKTYLDQVFMPVQVKYFIALDAMFDYQGSLMNVA 178 Query: 178 VEDAEAAYNTTRLIMLGSGLLSTLFASLIAWTISRSITRPLSRAVEVAETVAAGDLTAVI 237 + A A R I+ +S L + + W ++RSITRPL+ AV VA VA GDL+ + Sbjct: 179 GDAASATSVQARTIINILAGISLLLSIAVGWWVTRSITRPLNTAVGVARRVAQGDLSGPV 238 Query: 238 TAHSTDETGRLLQALAAMNQKLKAIVLEVRHSTDSMVAASTQIATGNLDLSSRTEEQASA 297 +T+E G+L+ AL MN L IV +VR+ T ++ AS +IA GN+DLSSRTE+QAS+ Sbjct: 239 FVKTTNEVGQLMAALKTMNDNLHHIVTQVRNGTGTIANASGEIARGNMDLSSRTEQQASS 298 Query: 298 LEETASSLEQLTSSVKQNADHTRKSSELAGTATAVANQGGEAVKQVVQTMGAINDSSRKI 357 LEETAS++E+LTS+V++NAD+ +++++LA +AT VA QGG V +V+ TM AIN SS+KI Sbjct: 299 LEETASAMEELTSTVRENADNAQQANQLAASATKVARQGGSVVHEVIATMAAINTSSKKI 358 Query: 358 VDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSATAAKEIKELI 417 DI VID IAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSATAA EIK LI Sbjct: 359 ADITGVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSATAAMEIKALI 418 Query: 418 NDSVNQVSSGTELVAQAGNTMDQVVSSIEQVGHIVSEISSATHEQSEGIEQVNQAIMQMD 477 +DSV +V +G++LV QAG T+D+VV+S+ + IV+ IS+A+ EQS GIEQV QAI+Q+D Sbjct: 419 DDSVAKVDNGSKLVQQAGLTIDEVVTSVGSLSGIVAAISNASQEQSAGIEQVGQAIVQID 478 Query: 478 NTTQQNAALVEEAAAAAQALQDQAQRLLELVSVFRLDEAGGPELRTMQMPQAASLKSSAV 537 TQQNAALVE++AAAAQ+L++QA +L++LVS+F+LD + T P A L Sbjct: 479 EGTQQNAALVEQSAAAAQSLREQADQLMQLVSIFKLDR---QSVATSAAPAAGKLHLVTT 535 Query: 538 TSKALPS 544 ++ LP+ Sbjct: 536 STALLPA 542 >gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis transducer transmembrane protein [Janthinobacterium sp. Marseille] Length = 568 Score = 414 bits (1064), Expect = e-117, Method: Compositional matrix adjust. Identities = 264/597 (44%), Positives = 373/597 (62%), Gaps = 44/597 (7%) Query: 1 MRFNNFSIATRLAIAFSVLILAIATIVTLGLIRLGDINEAINLVVNDRYKKIALINTIAG 60 M+ N I+TRL+ F++L+ + + +G++RL ++ + +++ K L Sbjct: 1 MKITNLKISTRLSFGFALLLTLMVMMTVVGILRLQEVGTSADVMTQTMLPKERLAQ---- 56 Query: 61 KMDDVAISVRNQLLTSDPGQAAREQANTKELASQVAAHFQ---------------ELETF 105 + L++ AR A+ K +++ A FQ E+E+ Sbjct: 57 -----------EWLSAVDVNGARTLASAKTTSAEDQAFFQKQMDKTSVRANELQKEIESM 105 Query: 106 LIDPAARAQFAKVMTARDQYTSLRTQIEELNAKGQRETAVELLVVKLTSLQKAYFGELEA 165 + P + F +++ AR+ Y +R + +L A+G+ A L+ K+ AY ++A Sbjct: 106 IKTPEDKRLFEELVVARNAYRDIRQTVFKLKAEGKLPEAQLLINEKMLPAMNAYSNSIDA 165 Query: 166 FSNMQKKLMDQSVEDAEAAYNTTRLIMLGSGLLSTLFASLIAWTISRSITRPLSRAVEVA 225 +KKL+D++ ++A+ + R +++G + AW ++ SITRPL+RAV VA Sbjct: 166 VLQNEKKLIDEAGTSIQSAFLSGRSLLIGLLAAAVALGVFFAWRLAISITRPLNRAVTVA 225 Query: 226 ETVAAGDLTAVITAHSTDETGRLLQALAAMNQKLKAIVLEVRHSTDSMVAASTQIATGNL 285 TVA+GDL+A I S DETG+L+QAL M Q L V EVR T+++ AS QIA+GNL Sbjct: 226 RTVASGDLSAKIEVSSNDETGQLMQALKDMTQSLNKTVSEVRSGTETIATASRQIASGNL 285 Query: 286 DLSSRTEEQASALEETASSLEQLTSSVKQNADHTRKSSELAGTATAVANQGGEAVKQVVQ 345 DLSSRTEEQAS+L ETA+S+ QLTS+V+QNAD+ R+++ LA +A+ VA +GG V +VV Sbjct: 286 DLSSRTEEQASSLGETAASMGQLTSTVRQNADNARQANSLAMSASDVAVKGGSVVSEVVD 345 Query: 346 TMGAINDSSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQR 405 TM +IN+S+RKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQR Sbjct: 346 TMASINESARKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQR 405 Query: 406 SATAAKEIKELINDSVNQVSSGTELVAQAGNTMDQVVSSIEQVGHIVSEISSATHEQSEG 465 SA AAKEIK LI DSV +V +G++LV +AG+TM+++V S+++V I++EI +A+ EQS G Sbjct: 406 SAAAAKEIKILIGDSVGKVEAGSKLVNEAGSTMNEIVDSVKRVTDIMAEIMAASQEQSSG 465 Query: 466 IEQVNQAIMQMDNTTQQNAALVEEAAAAAQALQDQAQRLLELVSVFRLDEAGGPELRTMQ 525 I+QVNQAI QMD TQQNAALVEEAAAAA++LQDQA L +VS F+LD P Sbjct: 466 IDQVNQAIGQMDQVTQQNAALVEEAAAAAESLQDQAGNLARVVSQFKLD-GNQPAF---- 520 Query: 526 MPQAASLKSSAVTSKALPSKQQTQPQSARPAAIGANQAPRALPNSIKDDKKEEWESF 582 +SL V P+ + Q+A+P AP+ + D +WE F Sbjct: 521 ---VSSLDDIPVVRNTTPA---IRTQAAKPLLSNPVHAPKREKATAGAD---DWEEF 568 >gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 407 bits (1047), Expect = e-115, Method: Compositional matrix adjust. Identities = 263/583 (45%), Positives = 359/583 (61%), Gaps = 23/583 (3%) Query: 3 FNNFSIATRLAIAFSVLILAIATIVTLGLIRLGDINEAINLVVNDRYKKIALINTIAGKM 62 F+N I RL + F V++ I G+ +L ++ ++ K +++ A Sbjct: 4 FSNMKIGARLMLGFGVVLALSIAIAADGIRQLHAVSAITRSMLELPIAKERMVSDWAAIT 63 Query: 63 DDVAISVRNQLLTSDPGQAAREQANTKELASQVAAHFQELETFLIDPAARAQFAKVMTAR 122 ++DP A + + Q Q+LE L + +AK++ R Sbjct: 64 KASIARTIGVAKSADPALAQFSAKFAADDSKQSMEIIQKLEPLLNTDQEKELYAKILDVR 123 Query: 123 DQYTSLRTQIEELNAKGQRETAVELLVVKLTSLQKAYFGELEAFSNMQKKLMDQS---VE 179 + + R + +L +G+ A + ++ F +++K MD + Sbjct: 124 KSFLAGREGVMKLKTEGKEAEAAKYFDTTFLPAADSFKNHFTEFVELERKQMDAGTAQLS 183 Query: 180 DAEAAYNTTRLIMLGSGLLSTLFASLIAWTISRSITRPLSRAVEVAETVAAGDLTAVITA 239 D EAA +TR +ML S ++ F AW ++ ITRPL AV+ A VA GDLT I A Sbjct: 184 DVEAA--STRQLMLLSAMV-LAFGIFCAWRLTIGITRPLKTAVDAARRVAGGDLTNDIKA 240 Query: 240 HSTDETGRLLQALAAMNQKLKAIVLEVRHSTDSMVAASTQIATGNLDLSSRTEEQASALE 299 S DE G+LL AL MN L+ IV EVR T+++ AS +IA GNLDLSSRTE+QAS+LE Sbjct: 241 ESKDECGQLLAALKDMNDGLQRIVGEVRLGTETITTASNEIAAGNLDLSSRTEQQASSLE 300 Query: 300 ETASSLEQLTSSVKQNADHTRKSSELAGTATAVANQGGEAVKQVVQTMGAINDSSRKIVD 359 ETASS+E+LTS+VKQNAD+ R++++LA +A+ VA +GG+ V QVVQTM +IN+SSRKIVD Sbjct: 301 ETASSMEELTSTVKQNADNARQANQLAVSASEVALKGGDVVSQVVQTMSSINESSRKIVD 360 Query: 360 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSATAAKEIKELIND 419 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA+AAKEIK LI D Sbjct: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSASAAKEIKALIGD 420 Query: 420 SVNQVSSGTELVAQAGNTMDQVVSSIEQVGHIVSEISSATHEQSEGIEQVNQAIMQMDNT 479 SV +V +G +LVA+AG TMD++V+SI +V I+ EI++A+ EQS GIEQ+NQAI QMD+ Sbjct: 421 SVGKVDTGNKLVAEAGATMDEIVNSIRRVTDIMGEITAASQEQSAGIEQINQAIGQMDHV 480 Query: 480 TQQNAALVEEAAAAAQALQDQAQRLLELVSVFRLDEAGGPELRTMQMPQAASLKSSAVTS 539 TQQNA+LVEEAAAAA+++QDQA++L ++V F+LD A +A ++S VT Sbjct: 481 TQQNASLVEEAAAAAESMQDQARKLGQVVGAFKLDNA----------QEANPPRASGVTR 530 Query: 540 KALPSKQQTQPQSARPAAIGANQAPRALPNSIKDDKKEEWESF 582 A P A A + +A ALP +EWE F Sbjct: 531 LA-PKPAAGSAGLAVAAPLPQRRANGALPAG------DEWEQF 566 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.311 0.123 0.313 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 975,506 Number of extensions: 31422 Number of successful extensions: 289 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 190 Number of HSP's successfully gapped: 21 Length of query: 582 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 494 Effective length of database: 895,685 Effective search space: 442468390 Effective search space used: 442468390 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 132 (55.5 bits)