BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3432.p
         (284 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152983058|ref|YP_001352651.1| transposase [Janthinobacterium ...   292   1e-80

>gi|152983058|ref|YP_001352651.1| transposase [Janthinobacterium sp.
           Marseille]
          Length = 301

 Score =  292 bits (748), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 147/283 (51%), Positives = 194/283 (68%), Gaps = 1/283 (0%)

Query: 2   AHEPQHAVRTMCRVMRVHPSGYYAWKARPESERTKENRRLLGLIKQSWLESGGVYGYRKI 61
           +H  + +V +MC+ + V  SGYYAW   P S+R +E+ RLL LI+ S++ S G+YG  ++
Sbjct: 19  SHRDEFSVISMCQALDVERSGYYAWLKNPLSDRAQEDARLLKLIRASFMASHGIYGAPRV 78

Query: 62  AADLRDLGERCGKHRVYRLMRTEGLKCQTGYRRRAGRYGKPAVIAPNHLQQKFDVPAPNL 121
             DLR+ GE C KHRV RLMR  GL+   GYR R     KP+ + PN LQ++F V  PN 
Sbjct: 79  FQDLRERGELCSKHRVARLMRENGLRALHGYRIRHIPVSKPSPLIPNLLQRQFTVTRPNE 138

Query: 122 AWVTDITYIRTHEGWLYLAVVLDLFSRQVIGWSMGSRIDRNLAMDALLMAVWRRSPEQEV 181
           AWVTDITYIRT +GWLYLAVV+DLFSR+V+GW++   I R L +DA+  AV  R P +  
Sbjct: 139 AWVTDITYIRTWQGWLYLAVVMDLFSRKVVGWAVRPTIHRELVLDAIAKAVRSRRP-RHT 197

Query: 182 IVHSDQGSQFSSHDWQAFLKSHNLVPSMSRRGNCHDNAVAESFFQLLKRERIKRRIYADR 241
           ++HSDQG+Q+ S  W+ F K+++L PSMSRR NC DNAV ESFF  LK+ER+K+ IYADR
Sbjct: 198 LIHSDQGTQYGSDAWRRFCKANHLEPSMSRRANCWDNAVVESFFSSLKKERVKKHIYADR 257

Query: 242 NEARSDVFDYIEMFYNPKRRHSYSGNVSPVQFEQQYFNRLESV 284
             A  D+ +YI+ FYN  RRHS+ G VSP  FE  +  R  +V
Sbjct: 258 ETATLDLAEYIDDFYNGVRRHSHLGGVSPNTFETAHRRRKSAV 300


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.323    0.136    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 687,978
Number of extensions: 27387
Number of successful extensions: 45
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 202
Effective length of database: 917,867
Effective search space: 185409134
Effective search space used: 185409134
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 129 (54.3 bits)