BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3428.p (380 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981349|ref|YP_001352355.1| ABC-type branched-chain amino a... 556 e-160 gi|152981352|ref|YP_001354956.1| ABC-type branched-chain amino a... 350 9e-98 gi|152981482|ref|YP_001352346.1| ABC-type branched-chain amino a... 127 1e-30 gi|152981426|ref|YP_001352468.1| ABC-type branched-chain amino a... 100 2e-22 >gi|152981349|ref|YP_001352355.1| ABC-type branched-chain amino acid transport systems, periplasmic component [Janthinobacterium sp. Marseille] Length = 381 Score = 556 bits (1433), Expect = e-160, Method: Compositional matrix adjust. Identities = 280/381 (73%), Positives = 327/381 (85%), Gaps = 1/381 (0%) Query: 1 MKLKCAILPLTAAIGMAFAGAAYAQE-VIKIAHVGPLSGPNAHMGKDNENGARMAVDELN 59 M+ K ++PLT A+ +A AG+ AQE ++KI HVGP++G +AHMGKDNENGAR+AV+ELN Sbjct: 1 MQFKTKMIPLTGAVLLALAGSTLAQEQIVKIGHVGPVTGTDAHMGKDNENGARLAVEELN 60 Query: 60 AKGFTIGGKKVKFELLGEDDASDPKQATAVATKLVDQKVAAVIGHLNSGTTIPASKIYSD 119 AKG I GKKVK + + EDDA+DPKQATA ATKLVD VA VIGHLNSG TIPAS+IY++ Sbjct: 61 AKGVVINGKKVKLQYMPEDDAADPKQATAAATKLVDSNVAVVIGHLNSGATIPASRIYAN 120 Query: 120 AGIPQVSPSATNPKYTQQGFKTTFRVVANDAQLGAALGKYAVQKLGTKQIAVIDDRTAYG 179 AGI Q+SPS+T+PKYTQQGFKT FRVVANDAQLG LG+YAV+ L K +AVIDDRTAYG Sbjct: 121 AGIVQISPSSTSPKYTQQGFKTAFRVVANDAQLGRVLGQYAVKSLAAKNVAVIDDRTAYG 180 Query: 180 QGVAQEFAKGAKAAGGTIVGTQFTNDKATDFNAILTSLKGKKPDVIFFGGMDAVGGPMLR 239 QGVA+EFAKG KAAGGT+V +Q+TN+KATDFNAILT++K KKPDVIFFGGMDAVGGPML+ Sbjct: 181 QGVAEEFAKGVKAAGGTVVASQYTNNKATDFNAILTAIKAKKPDVIFFGGMDAVGGPMLQ 240 Query: 240 QMKQLGISAKFMGGDGICTGSLPGLAGDGLGDDQVVCAEAGGVDEAGKKGMDDFRAAYKK 299 QMKQLGI+AKFMGGDGICTGSLPGLAG GLG++ V CAEAGGV++A K G+D FRAAYKK Sbjct: 241 QMKQLGINAKFMGGDGICTGSLPGLAGAGLGENNVYCAEAGGVEDARKAGLDKFRAAYKK 300 Query: 300 KFGIDVVYNAAYAYDATMTVADAMAKAGSADPKKYLPELAKISHKGVTGVIAFDAHGDVK 359 +FGIDV+Y AAYAYDAT V DAM KA S + KYLPEL KIS+ GVTG IAFDA GD+K Sbjct: 301 RFGIDVIYTAAYAYDATYAVVDAMQKAKSWESAKYLPELTKISYPGVTGTIAFDAKGDIK 360 Query: 360 DGSLTLYTYKGGQRTLLAVTK 380 DG+LTLYTY+GG+RT LAV K Sbjct: 361 DGTLTLYTYRGGKRTELAVVK 381 >gi|152981352|ref|YP_001354956.1| ABC-type branched-chain amino acid transport systems, periplasmic component [Janthinobacterium sp. Marseille] Length = 376 Score = 350 bits (898), Expect = 9e-98, Method: Compositional matrix adjust. Identities = 178/377 (47%), Positives = 239/377 (63%), Gaps = 5/377 (1%) Query: 1 MKLKCAILPLTAAIGMAFAGAAYAQEVIKIAHVGPLSGPNAHMGKDNENGARMAVDELNA 60 MK I P+ A A Q V KI PL+GP A GKD++NGAR+AVDELN Sbjct: 1 MKSSSFIFPILIASASTLVQAQEVQTV-KIGLAAPLTGPQAFYGKDSQNGARLAVDELNE 59 Query: 61 KGFTIGGKKVKFELLGEDDASDPKQATAVATKLVDQKVAAVIGHLNSGTTIPASKIYSDA 120 K +GGK+++FELL EDDA+DPKQ AVA + D V AVIGH NSGT IPA++IY Sbjct: 60 KKIVVGGKQLRFELLSEDDAADPKQGAAVAQRFCDLHVNAVIGHTNSGTAIPAARIYHQC 119 Query: 121 GIPQVSPSATNPKYTQQGFKTTFRVVANDAQLGAALGKYAVQKLGTKQIAVIDDRTAYGQ 180 G+P +SPSAT+P+ T+ + TTFR++AND+ L AL Y V L K IAV+DDR+AYGQ Sbjct: 120 GLPNLSPSATSPELTKSAYNTTFRMLANDSTLAQALAAYTVNVLKLKTIAVVDDRSAYGQ 179 Query: 181 GVAQEFAKGAKAAGGTIVGTQFTNDKATDFNAILTSLKGKKPDVIFFGGMDAVGGPMLRQ 240 G+A F + +V Q+TNDKA DF+AILT++KG+ PD +FFGGMD G MLRQ Sbjct: 180 GLADAFRTALRNTPVQVVTQQYTNDKAVDFSAILTAIKGRNPDAVFFGGMDPQGSAMLRQ 239 Query: 241 MKQLGIS-AKFMGGDGICTGSLPGLAGDGLGDDQVVCAEAG-GVDEAGKKGMDDFRAAYK 298 M+QLG++ KF+GGDGICT + D +VCA +G +D ++ Y Sbjct: 240 MEQLGLTRQKFIGGDGICTQGMEQRTEGMKIQDNLVCAHSGIALDRT--TASRAWKKRYD 297 Query: 299 KKFGIDVVYNAAYAYDATMTVADAMAKAGSADPKKYLPELAKISHKGVTGVIAFDAHGDV 358 +KF + Y+YDA + VA AM A S +P+KYLP + K+ GV + FDA G++ Sbjct: 298 EKFPGQFQMHGPYSYDAVLAVAKAMQAANSVEPQKYLPAMGKVHFAGVMSNVQFDARGEI 357 Query: 359 KDGSLTLYTYKGGQRTL 375 K+ ++++YTY+ G+R L Sbjct: 358 KNPTISIYTYQDGKRRL 374 >gi|152981482|ref|YP_001352346.1| ABC-type branched-chain amino acid transport systems, periplasmic component [Janthinobacterium sp. Marseille] Length = 391 Score = 127 bits (319), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 115/391 (29%), Positives = 183/391 (46%), Gaps = 28/391 (7%) Query: 3 LKCAILPLTAAIGMAFAG-AAYAQEVIKIAHVGPLSGPNAHMGKDNENGARMAVDELNAK 61 LK A++ AA+GM+ A A++V+KIA VGPL+G + +G N A +AV NA Sbjct: 8 LKAAVV--CAAVGMSLLSMTASAKDVVKIAFVGPLTGGVSSIGLGGRNSADLAVRLRNAD 65 Query: 62 GFTIGGKKVKFELLGEDDASDPKQATAVATKLV-DQKVAAVIGHLNSGTTIPASKIYSDA 120 K ++L+ +DD P VATK+ D+ + A + H S + +Y+ Sbjct: 66 P----KAKYTYQLVTQDDECRPNVGVQVATKIAADKSIVAGVTHFCSAVAMGTVGVYNRF 121 Query: 121 GIPQVSPSATNPKYTQ-QGFKTTFRVVANDAQLGAALGKYAVQKLGTKQIAVIDDRTAYG 179 G+P + A P+ T FK RV K+ + K G K+ A+I D T YG Sbjct: 122 GLPVIVWGAVLPEITYGNDFKEVHRVNGTMINQSEVAAKFMISK-GYKKWAIIHDTTDYG 180 Query: 180 QGVAQEFAKGAKAAGGTIVGTQFTNDKATDFNAILTSLKGKKPDVIFFGGMDAVGGPMLR 239 +G + F++ K GGT++ T DF LT ++ KPDV++FGG+ +G + Sbjct: 181 KGHNKYFSEFVKKNGGTVLSTFGVTADQQDFTTELTKIRELKPDVVYFGGLTPLGVRIRT 240 Query: 240 QMKQLGISAKFMGGDGICTGSLPGLAGDGLGDDQVVCAEAGGVDEAGKKGMDDFRAAYK- 298 QM++LGI A+F G GI + + G+ + + + E ++ G F A Y+ Sbjct: 241 QMEKLGIKAQFEGTSGIKSDAYIQGVGEKVAEGSLSFIEGAPWEKI--PGGLFFTAKYQL 298 Query: 299 KKFGIDVVYNAAYAYDATMTVADAMAKAGSADPKKYLPELAKISH-KGVTGVIAFDAHGD 357 +K+ +A+ A + DA+ K G D KK L + + G + FD H Sbjct: 299 QKYSEPPEAYGPFAFAAANLIMDAVEKVGP-DRKKVRDVLNQTKDVDTLIGKVTFDDHRQ 357 Query: 358 ----------VKDGSLTLY---TYKGGQRTL 375 V+DG ++ +Y G+R L Sbjct: 358 NIVPLVTKYVVEDGKWVIWEDSSYATGKRKL 388 >gi|152981426|ref|YP_001352468.1| ABC-type branched-chain amino acid transport systems, periplasmic component [Janthinobacterium sp. Marseille] Length = 385 Score = 100 bits (248), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 108/361 (29%), Positives = 161/361 (44%), Gaps = 24/361 (6%) Query: 10 LTAAIGMAF--AGAAYAQEVIKIAHVGPLSGPNAHMGKDNENGARMAVDELNAKGFTIGG 67 L A IG+A A +AYAQE IKI PL+GP A G NGAR+A D +N G +G Sbjct: 9 LAACIGLAMFAATSAYAQETIKIGVTEPLTGPVAAAGTYVTNGARIAADYVNQNGGVLGK 68 Query: 68 KKVKFELLGEDDASDPKQATAVATKLV-DQKVAAVIGHLNSGTTIPASKIYSDAGIPQVS 126 K +L+ ED+ S+P++A KL+ KV ++G +S T+ + +P V Sbjct: 69 ---KIQLVIEDNKSNPREAVNSVEKLILKDKVPVLMGAWSSTFTLAIMPKLIEYEVPLVV 125 Query: 127 PSATNPKYTQQGFKTTFRVVANDAQLGAALGKY------AVQKLGTKQIAVIDDRTAYGQ 180 +A++ K T G FR A A K A++K + V +D +G Sbjct: 126 EAASSSKITTAGNPWVFRTSPTSAMEAQAFSKVIDGYNPAIKK--ADFLVVNND---WGL 180 Query: 181 GVAQEFAKGAKAAGGTIVGTQFTNDKATDFNAILTSLKGKKPDVIFF-GGMDAVGGPMLR 239 G A EF K +A G I T+ TD +A L +LKG D +F G++ + +R Sbjct: 181 GAAVEFKKMLEAKGIAIGRTETMTPDMTDLSAQLAALKGSGSDTVFVTSGIEQLTL-AIR 239 Query: 240 QMKQLGISAKFMGGDGICTGSLPGLAGDGLGDDQVVCAEAGGVDEAGKKG--MDDFRAAY 297 Q + + + + G L G Q + A E K F + Sbjct: 240 QAGEQRLPQRIITTGGAFPEPLLKTPGPKGYVSQHLLFFAPWAPERAKHPAVAKAFMDGW 299 Query: 298 KKKFGIDVV--YNAAYAYDATMTVADAMAKAGSADPKKYLPELAKISHKGVTGVIAFDAH 355 K + G+++ +DA +T+A+A+ AG A+P L K+ KG G IAF Sbjct: 300 KSR-GLELAGQVEGFRGFDAILTIAEAIKLAGKAEPAAIRDALWKVQVKGTNGDIAFSKV 358 Query: 356 G 356 G Sbjct: 359 G 359 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.315 0.133 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 835,093 Number of extensions: 33622 Number of successful extensions: 158 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 152 Number of HSP's successfully gapped: 6 Length of query: 380 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 295 Effective length of database: 906,776 Effective search space: 267498920 Effective search space used: 267498920 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)