BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3427.p
         (170 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981736|ref|YP_001352356.1| AsnC family transcriptional reg...   304   2e-84
gi|152981798|ref|YP_001355132.1| auxin efflux carrier [Janthinob...   134   3e-33
gi|152980927|ref|YP_001351836.1| Lpr family transcriptional regu...    87   5e-19

>gi|152981736|ref|YP_001352356.1| AsnC family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 169

 Score =  304 bits (778), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 139/166 (83%), Positives = 155/166 (93%)

Query: 3   AKLHTLDKVDRKLLNMLQKDNQISTRVLAEKLHISQPTCLRRIRELREAGIISAEVAMVD 62
           +KLHTLDKVDRKLLN+LQKDNQ  TR LA+K+HISQPTCLRRIR++R+AGIISA+VAM+D
Sbjct: 2   SKLHTLDKVDRKLLNLLQKDNQTPTRTLADKVHISQPTCLRRIRDMRDAGIISADVAMID 61

Query: 63  PFALGYGMLAFLEISLNNQSDQHMQDFEQRMAKEAEVMQCYFVSGEYDYFLAVHVIDMDA 122
           PFALGYGMLAFLE+SL NQSD+HMQ+FE RM KEAEVMQCYFVSG+YDYFL VHV+DMDA
Sbjct: 62  PFALGYGMLAFLEVSLGNQSDEHMQEFEVRMGKEAEVMQCYFVSGDYDYFLVVHVVDMDA 121

Query: 123 YYQFVRRVISGSGNVRHFQSRFPMKRAKFTTRIAFDEKAVEVQVRV 168
           YYQFVRR ISGSGNVRHFQSRFPMKRAKF TRIAFDEK+  VQVR+
Sbjct: 122 YYQFVRRAISGSGNVRHFQSRFPMKRAKFDTRIAFDEKSAAVQVRI 167


>gi|152981798|ref|YP_001355132.1| auxin efflux carrier
           [Janthinobacterium sp. Marseille]
          Length = 157

 Score =  134 bits (337), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 65/149 (43%), Positives = 98/149 (65%)

Query: 8   LDKVDRKLLNMLQKDNQISTRVLAEKLHISQPTCLRRIRELREAGIISAEVAMVDPFALG 67
           LD++DR++LN LQ D   +   LA  +H S PTCLRR++ L +AG+I  +VA+V P  +G
Sbjct: 8   LDELDRRILNALQMDASQTNNDLAAAVHASPPTCLRRVKRLIDAGVIERQVAIVAPQMVG 67

Query: 68  YGMLAFLEISLNNQSDQHMQDFEQRMAKEAEVMQCYFVSGEYDYFLAVHVIDMDAYYQFV 127
            G+ + +EI+L+ Q+D+   +FE  +A+E+ V+QCY VS   D+ L V V DM AY+   
Sbjct: 68  AGLTSIVEITLDKQADEQQVEFEALVAQESAVLQCYRVSPGPDFVLVVQVADMPAYHVLA 127

Query: 128 RRVISGSGNVRHFQSRFPMKRAKFTTRIA 156
            R+ +   NVR+ +S F + R+KF TRIA
Sbjct: 128 HRLFATHANVRNVRSFFSINRSKFETRIA 156


>gi|152980927|ref|YP_001351836.1| Lpr family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 155

 Score = 87.4 bits (215), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 74/123 (60%)

Query: 5   LHTLDKVDRKLLNMLQKDNQISTRVLAEKLHISQPTCLRRIRELREAGIISAEVAMVDPF 64
           +   D+ DR LL  LQ   + S   L+E++++S P C RR++ L + G+I    A VD  
Sbjct: 1   MEKFDRYDRILLETLQSKGRASNVELSERVNLSPPQCYRRVQRLEQEGVIRGYSAQVDAA 60

Query: 65  ALGYGMLAFLEISLNNQSDQHMQDFEQRMAKEAEVMQCYFVSGEYDYFLAVHVIDMDAYY 124
           A+G G+ AF+ +++  +  + +++ E+ + +  E+++CY +SG++DY L V  +D+ +  
Sbjct: 61  AIGLGVTAFVNLNIAREQFKQVRELEKAIRQFPEILECYTISGDFDYLLKVVAVDLKSLS 120

Query: 125 QFV 127
            F+
Sbjct: 121 SFL 123


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.325    0.137    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 347,993
Number of extensions: 12264
Number of successful extensions: 60
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 3
Length of query: 170
Length of database: 1,221,021
Length adjustment: 77
Effective length of query: 93
Effective length of database: 936,352
Effective search space: 87080736
Effective search space used: 87080736
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 126 (53.1 bits)