BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3425.p
         (223 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979997|ref|YP_001353998.1| ribose-5-phosphate isomerase A ...   370   e-104

>gi|152979997|ref|YP_001353998.1| ribose-5-phosphate isomerase A
           [Janthinobacterium sp. Marseille]
          Length = 223

 Score =  370 bits (950), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 182/223 (81%), Positives = 205/223 (91%)

Query: 1   MTQDELKQAVAKAAIDYVVDGEIIGVGTGSTANFFIDELGKIKHRIKGAVASSEATAERL 60
           MTQDE+KQAVA+AAIDYVV GEIIGVGTGSTANFFIDELGKIK RIKGAVASSEATAERL
Sbjct: 1   MTQDEMKQAVARAAIDYVVAGEIIGVGTGSTANFFIDELGKIKDRIKGAVASSEATAERL 60

Query: 61  RSHGITVFDLNEVETMPVYIDGADEINGAGAMIKGGGAALTREKIVASVAQKFVCIADGS 120
           R+HGIT+FDLN++++M VYIDGADEI   GAMIKGGGAALTREKIVASVA+KFVCIADGS
Sbjct: 61  RAHGITIFDLNDIDSMSVYIDGADEITAQGAMIKGGGAALTREKIVASVAKKFVCIADGS 120

Query: 121 KLVEVLGKFPLPVEVIPMSHAVVARKLAALGGQPRLRLKDGQPLVTDNGCYIIDLLGLSI 180
           KLV+ LGKFPLPVEVIPM+ AVVARKLAALGG+PRLR+KDG+ +VTDNGCYIID+LGL I
Sbjct: 121 KLVDKLGKFPLPVEVIPMAQAVVARKLAALGGEPRLRVKDGKAVVTDNGCYIIDVLGLQI 180

Query: 181 TDPADIEDKINNIVGVVTNGLFARQGANVCLLGTAEGVKKLEF 223
            DPA +E +IN+IVGVVT GLFAR+GA++ LLGTA+GV  L F
Sbjct: 181 EDPATLEAQINDIVGVVTVGLFARRGADIALLGTADGVNSLSF 223


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.138    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 491,242
Number of extensions: 19889
Number of successful extensions: 71
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 1
Length of query: 223
Length of database: 1,221,021
Length adjustment: 80
Effective length of query: 143
Effective length of database: 925,261
Effective search space: 132312323
Effective search space used: 132312323
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)