BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3421.p (1351 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980496|ref|YP_001352870.1| ATP-dependent helicase [Janthin... 2167 0.0 >gi|152980496|ref|YP_001352870.1| ATP-dependent helicase [Janthinobacterium sp. Marseille] Length = 1319 Score = 2167 bits (5616), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1065/1341 (79%), Positives = 1174/1341 (87%), Gaps = 33/1341 (2%) Query: 19 PQQDRGRGPREPRGPRRAEPASEAAPPVRNPLPPVTFPEELPVSGRRHEIAEALRRHQVI 78 P+ ++ G R R A+ S APPVRNPLP ++FPEELPVSG+R +IA A++ +QVI Sbjct: 4 PESNQRPGNASRRPARNAQAPS--APPVRNPLPAISFPEELPVSGKRDDIARAIQANQVI 61 Query: 79 IVSGETGSGKTTQLPKICLELGRGAKGLIGHTQPRRIAASSTAKRIAQELNSPPGELVGY 138 IVSGETGSGKTTQLPKICLELGRG GLIGHTQPRRIAASSTAKRIAQE+ SP GE VG+ Sbjct: 62 IVSGETGSGKTTQLPKICLELGRGLNGLIGHTQPRRIAASSTAKRIAQEIGSPLGEHVGF 121 Query: 139 KVRFNDTLSKGAWIKLMTDGILLAETQTDPLLRQYDTIIIDEAHERSLNIDFLLGYLKQL 198 KVRFNDTL+KGAWIKLMTDGILLAETQTDPLLRQYDTIIIDEAHERSLNIDFLLGYLKQL Sbjct: 122 KVRFNDTLTKGAWIKLMTDGILLAETQTDPLLRQYDTIIIDEAHERSLNIDFLLGYLKQL 181 Query: 199 LPKRPDLKIIITSATIDADRFARHFGRELKGELVPAPVIEVSGRLYPVEIRYRPIDNADR 258 LPKRPDLK+IITSATIDADRFARHFG G+L APVIEVSGRLYPVE+RYRP++ D+ Sbjct: 182 LPKRPDLKVIITSATIDADRFARHFGS--NGKL--APVIEVSGRLYPVEVRYRPVEAFDK 237 Query: 259 SGVSTEVAQARARAEGRASQAQKDREQRDLMDAVVDAVDELARIGSGDVLVFLPGEREIR 318 + S A + A A R++ A K+R QRDLMDAVVDAVDELARIGSGDVLVFLPGEREIR Sbjct: 238 NADSNPNATSDAAAARRSALAAKERGQRDLMDAVVDAVDELARIGSGDVLVFLPGEREIR 297 Query: 319 DAAEALRKHHPPHVEILPLFARLSAQEQERVFKTSNARRIVLATNVAETSLTVPGIRYVV 378 DAAEALRKHHPPHVEILPLFARLS QEQERVFK SNARRIVLATNVAETSLTVPGIRYVV Sbjct: 298 DAAEALRKHHPPHVEILPLFARLSVQEQERVFKISNARRIVLATNVAETSLTVPGIRYVV 357 Query: 379 DAGLARVKRYSYRNKVEQLQIEPVAQSAANQRAGRCGRVAAGVCIRLYDEQDFLQRPKFT 438 DAGLARVKRYSYRNKVEQLQIEP+AQSAANQRAGRCGRVAAGVCIRLYDEQD+L RPKFT Sbjct: 358 DAGLARVKRYSYRNKVEQLQIEPIAQSAANQRAGRCGRVAAGVCIRLYDEQDYLLRPKFT 417 Query: 439 DPEILRSSLASVILRMKSLHLTDVESFPFIEPPLGRAIADGYQLLQELGAVEEQGGVNRL 498 +PEILRSSLASVILRMKSLHLTDVE+FPFIEPPLGRAIADGYQLLQELGAV+++ NRL Sbjct: 418 EPEILRSSLASVILRMKSLHLTDVETFPFIEPPLGRAIADGYQLLQELGAVDDE---NRL 474 Query: 499 TPLGKQLARLPLDPRVGRMILAGRDNACLTELLIIAAAVSVQDPRDRPMDAQNAADNAHK 558 T LG++LA+LPLDPRVGRMILA +DN CLTE+LIIAAA+SVQDPRDRPM+AQ AADNAHK Sbjct: 475 TKLGRELAKLPLDPRVGRMILAAKDNVCLTEVLIIAAALSVQDPRDRPMEAQGAADNAHK 534 Query: 559 KFADEKSEFASYLKIWKWFEDAIAHKKSNRQLQEHCRENFLSQLRLREWRDVHSQLLTIV 618 KFADEKSEF SYLKIWKWFEDAIAHKKSNR LQE CR NFLSQLRLREWRDVHSQLLTIV Sbjct: 535 KFADEKSEFTSYLKIWKWFEDAIAHKKSNRLLQEECRANFLSQLRLREWRDVHSQLLTIV 594 Query: 619 KEQGWRLNEAAATYDQLHLALLTGLLGNVGFKSDDDAQYLGARGIKFNIWPGAHLTKKPG 678 +EQGWRLNEA ATY+QLH ALLTGLLGN+GFK++D+ YLGARGIKF+IWPG+ L KK G Sbjct: 595 REQGWRLNEAPATYEQLHTALLTGLLGNIGFKAEDEPHYLGARGIKFHIWPGSSLIKKAG 654 Query: 679 RWVMAAELVDTARLYARCVANIQPEWLEKLGGHLLKKSWGEPRWEKRAAQVTASERATLY 738 +WVMAAELVDT RLYARC+A IQPEWLE++ GHLLKKS+GEPRWEKR AQV+A ERATLY Sbjct: 655 KWVMAAELVDTTRLYARCIAQIQPEWLERVAGHLLKKSYGEPRWEKRTAQVSAYERATLY 714 Query: 739 GLVVYSQRRINYGNINPVEAREIFIRDALVGGDFETRAPFFAHNQKLVREIENLEHKSRR 798 GLVVYSQRRI YG INP +AREIFIRDALVGGDFETRAPFFAHN KLVREIENLEHKSRR Sbjct: 715 GLVVYSQRRIQYGLINPADAREIFIRDALVGGDFETRAPFFAHNHKLVREIENLEHKSRR 774 Query: 799 LDVLVDDELIIGFYDKLIPQDICNGVDFEKWHKQATAADPKLLYLNRDDLMRHEAAGVTT 858 LDVLVDDELI FYDKLIP DI NG+ FEKWHK ATA +PKLLYLNRDDLMRHEAAGVTT Sbjct: 775 LDVLVDDELIAAFYDKLIPADIHNGISFEKWHKDATAKEPKLLYLNRDDLMRHEAAGVTT 834 Query: 859 ELFPKTMNVAGIAMALSYHFEPGAARDGVTLTVPLYALNQVSADRCEWLVPGMLKEKVHL 918 ELFPK MNVAG+ MALSYHFEPG RDGVTL VPLYALNQVSADRCEWLVPGMLKEKVHL Sbjct: 835 ELFPKVMNVAGVDMALSYHFEPGTPRDGVTLAVPLYALNQVSADRCEWLVPGMLKEKVHL 894 Query: 919 LLKSLPQKLRRHCVPLPDYAARFCERMEERKTFGRGNLIDAIIADIREQITLLVKPSDFK 978 LLKSLPQKLRRHCVPLPDYAA FC+R+++ FG+G+L+DA+IAD+REQ + K +D+K Sbjct: 895 LLKSLPQKLRRHCVPLPDYAAGFCDRVQDAHAFGKGSLLDAVIADVREQTGIATKTTDYK 954 Query: 979 QETLSAHHAMNFKIVDEHGRQLEMGRNLAALQAEFGGQARQQFQKLAEQVAIAPREDEDS 1038 ETLSAH MNFK++DEHGRQLEMGRNLA+L+ EFGGQAR+ FQ++AE+ + Sbjct: 955 LETLSAHQFMNFKVIDEHGRQLEMGRNLASLRNEFGGQARESFQRIAEK----------T 1004 Query: 1039 AAPLPAAAAGKGGATIATPA--------APASVGEYSNLTSWSFGELPELLEITRGSGKQ 1090 AAP+ AA + ATPA A+ G + NLTSW+FGELPELLEI +G Sbjct: 1005 AAPMAQAAQVQVAGKAATPATGNKATSSTSAATGIHQNLTSWTFGELPELLEIQQGK--- 1061 Query: 1091 AQTLIGFPALVDRLTHCDLEVFDDPTEAARFHYAGLRRLFALQMKEQLKYLEKNIPGLQQ 1150 QTLIGFPALVD+ +CDLEVFDDP EAAR H GLRRL ALQ+KEQLKYLEKNIPGLQQ Sbjct: 1062 -QTLIGFPALVDKGAYCDLEVFDDPNEAARVHRIGLRRLLALQLKEQLKYLEKNIPGLQQ 1120 Query: 1151 MGMQFMALGTQEELREQILNAGLERAFLQDPLPRNADEFNRRRDEGKARLGLLVNEIARL 1210 MGMQFMALG+QEELREQI++AGLERA LQ+PLP+ A++FN R+DEGK+RLGLLVNEIARL Sbjct: 1121 MGMQFMALGSQEELREQIIHAGLERACLQEPLPKTAEQFNARKDEGKSRLGLLVNEIARL 1180 Query: 1211 CGLILAEYHSLPKKLQGIKAHAQAAADMQAQLSQLVGKRFVAETDYGNLSHYPRYLKAIN 1270 GL+L EYH+LPKKLQ +KAH QA DMQAQL LVGKRF+A+ DY NL+H+PRYLKAIN Sbjct: 1181 VGLVLTEYHALPKKLQTVKAHTQAVNDMQAQLQGLVGKRFIADNDYTNLTHFPRYLKAIN 1240 Query: 1271 VRLDKLRADPARDTRLLAEWNSVALPYQRGLKDRAGRADPKMTEFRWMLEELRVSLYAQE 1330 VR+DKLRADPARDTR +AEW A P+QR LK+R G DPKMTEFRW+LEELRVSLYAQE Sbjct: 1241 VRIDKLRADPARDTRAMAEWQQAAAPWQRALKERHG--DPKMTEFRWLLEELRVSLYAQE 1298 Query: 1331 LKTPMPVSVKRLQKVWESMQR 1351 L+TPMPVSVKRLQKVWESMQR Sbjct: 1299 LRTPMPVSVKRLQKVWESMQR 1319 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.136 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 2,934,084 Number of extensions: 119660 Number of successful extensions: 431 Number of sequences better than 1.0e-08: 1 Number of HSP's gapped: 426 Number of HSP's successfully gapped: 1 Length of query: 1351 Length of database: 1,221,021 Length adjustment: 95 Effective length of query: 1256 Effective length of database: 869,806 Effective search space: 1092476336 Effective search space used: 1092476336 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 135 (56.6 bits)