BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3418.p (720 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981278|ref|YP_001351967.1| ABC-type transport system invol... 287 1e-78 gi|152981048|ref|YP_001355244.1| ABC-type multidrug transport sy... 281 9e-77 gi|152982656|ref|YP_001351943.1| ABC-type multidrug transport sy... 255 7e-69 gi|152981213|ref|YP_001352884.1| ABC-type multidrug transport sy... 247 1e-66 gi|152982174|ref|YP_001352225.1| ABC-type multidrug transport sy... 242 6e-65 >gi|152981278|ref|YP_001351967.1| ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Janthinobacterium sp. Marseille] Length = 630 Score = 287 bits (735), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 193/572 (33%), Positives = 314/572 (54%), Gaps = 19/572 (3%) Query: 146 FIPAVIKYRKALGEVLLISLALQLIGLCTPLFFQVVMDKVLVN-HAMKTLNVIAIGLIAA 204 IP + Y+ +G L +A ++ + PL + ++D + + + + + V+ +G++ A Sbjct: 26 LIPYLWTYKWRVGLALAFLIAAKMANVGVPLVLKRLIDSLTITPGSTQAMLVLPLGILIA 85 Query: 205 T----LFEAILGGIRTALFSHTSSKIDVELGSKLFAHLLSLPITYFQSRRAGDSIARI-R 259 L + +R F+ + + + K+F HL SL + + +R+ G I R Sbjct: 86 YGALRLSTTLFTELREYTFAKVTQRAVRTIALKVFRHLHSLSLRFHLNRQTGGMTRDIER 145 Query: 260 ELENIRSFLTSNAMTLLLDLVFSFVFLGVM-LWYSVTLSLIVLASIPLYLGLSFVFTPI- 317 + I S ++ ++L L+ + LG + L Y + ++I ++ Y+ + + T Sbjct: 146 GTKGISSLISYTLFSILPTLIEIVLVLGYLVLHYDIWFTVITGVALVSYIAFTVIVTEWR 205 Query: 318 --LRARLDDKFNKSAENQAFLVESLTGMDTIKSLAVEPRWQQKWDKQLAAYVSAGL-STA 374 R ++D + A +A ++SL +T+K E +++D+ L Y +A + S Sbjct: 206 THFRRTMND-LDSKANTKA--IDSLINYETVKYFGNEDYEARRYDEGLKRYETAAVKSQT 262 Query: 375 NIGLLASGSVSLVSKLVTAAIMWLGATLVIDQQLTVGELVAFNMLAGQVAAPVLRLAQLW 434 ++ LL +G S+++ VT I+W VI +T+G+LV N Q+ P+ L ++ Sbjct: 263 SLSLLNTGQSSIIAIAVTL-ILWRATQGVISGTMTLGDLVLVNAFMIQLYIPLNFLGVIY 321 Query: 435 NDFQQVGISMSRLGDVLDTRPEVTGK-KTRLPRLSGAII-FDQVSFRYRPETSEVLRALT 492 + +Q M RL +LD E+ K T+ GA + F V F Y ++L + Sbjct: 322 REIKQSLADMERLFSLLDQNREIADKPDTQALVTDGAEVRFSHVDFSYEAN-RQILFDVD 380 Query: 493 LNIRPGEVVGIVGRSGSGKSTLTKLVQRLYVCDRGKVMIDGQDLAVIDTASLRQQIGVVL 552 I G +VG SGSGKSTL++L+ R Y ++G ++IDGQD+ + SLRQ IG+V Sbjct: 381 FTIAAGTTTAVVGHSGSGKSTLSRLLFRFYDVNQGAILIDGQDVRDVTQTSLRQAIGIVP 440 Query: 553 QENMLFSRSIRDNIALTDPSLPIEAVIAAAKLAGAHEFICELPEAYDTLVGEHGTGLSGG 612 Q+ +LF+ +I NIA P ++AAA+ A HEFI LP+ Y+T+VGE G LSGG Sbjct: 441 QDTVLFNDTIAYNIAYGKPGASHADIVAAAQSAYIHEFIESLPDGYNTMVGERGLKLSGG 500 Query: 613 QRQRIAIARALISNPAILIFDEATSALDYESEKIIQDNMRQICAGRTVLIIAHRLSAVRD 672 ++QR+AIAR L+ +PAILIFDEATSALD +SE+ IQ +++I RT LIIAHRLS + D Sbjct: 501 EKQRVAIARTLLKHPAILIFDEATSALDSKSEQAIQAQLKEIAQNRTTLIIAHRLSTIAD 560 Query: 673 AHRIIVLDKGQIVESGRHEELLRKPGGLYAHL 704 A +I+VLDKG+I+E G H +LL G YA + Sbjct: 561 AAQILVLDKGRIIERGTHMQLLASEGA-YAQM 591 >gi|152981048|ref|YP_001355244.1| ABC-type multidrug transport system, ATPase and permease components [Janthinobacterium sp. Marseille] Length = 705 Score = 281 bits (719), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 189/540 (35%), Positives = 288/540 (53%), Gaps = 13/540 (2%) Query: 172 LCTPLFFQVVMDKVLV---NHAMKTLNVIAI---GLIAATLFEAILGGIRTALFSHTSSK 225 L P +MD VL+ N ++A+ GL + LF LG RT + + S + Sbjct: 145 LVPPYMTMPLMDNVLIPYQNGVPIDKGLVALYLGGLFGSALFAWGLGWARTYILALVSER 204 Query: 226 IDVELGSKLFAHLLSLPITYFQSRRAGDSIARI-RELENIRSFLTSNAMTLLLDLVFSFV 284 I +L + + HLL L + YF +R GD + RI E + I FL+ + + D++ + Sbjct: 205 IGADLRTTTYEHLLRLSLEYFGGKRTGDLMTRIGSETDRICVFLSLHLLDFFTDVLMIMM 264 Query: 285 FLGVMLWYSVTLSLIVLASIPLYLGLSFVFTPILRARLDDKFNKSAENQAFLVESLTGMD 344 +++ + L+L+ L +P + V LR + ++ L +++ G+ Sbjct: 265 TAAILISINPWLALVTLLPLPFIAWMIHVVRDKLRNGFEKVDRIWSQVTNVLADTIPGIR 324 Query: 345 TIKSLAVEPRWQQKWDKQLAAYVSAGLSTANIGLLASGSVSLVSKLVTAAIMWLGATLVI 404 +K+ A E R ++ + + + L S +V+ ++++ + LG V Sbjct: 325 VVKAFAQEKREAARFREANNHNLVVNDRVNKVWSLFSPTVTFLTEIGLLVVWALGIWQVS 384 Query: 405 DQQLTVGELVAFNMLAGQVAAPVLRLAQLWNDFQQVGISMSRLGDVLD---TRPEVTGKK 461 +TVG L AF + + ++++ + Q+ R+ D+LD + PE T Sbjct: 385 QGMITVGVLTAFLAYISRFYTRLDSMSRIVSVTQKAATGAKRIFDILDHVSSVPEAT-NP 443 Query: 462 TRLPRLSGAIIFDQVSFRYRPETSEVLRALTLNIRPGEVVGIVGRSGSGKSTLTKLVQRL 521 L ++ G I + FRY V+R L L I PGE++G+VG SGSGKSTL L+ R Sbjct: 444 VHLDKVQGKITIKDIGFRY--GNRAVIRGLDLTINPGEMIGLVGHSGSGKSTLVNLICRF 501 Query: 522 YVCDRGKVMIDGQDLAVIDTASLRQQIGVVLQENMLFSRSIRDNIALTDPSLPIEAVIAA 581 Y G +M+DG D+ I R+ IG+VLQE LF +I DNIA P E +IAA Sbjct: 502 YDVSAGAIMVDGVDVRSIPIPEYRRNIGLVLQEPFLFFGTIADNIAYGKPDASREDIIAA 561 Query: 582 AKLAGAHEFICELPEAYDTLVGEHGTGLSGGQRQRIAIARALISNPAILIFDEATSALDY 641 A+ A AHEFI LP YD++VGE G LSGG+RQRI+IARAL+ +P ILI DEATS++D Sbjct: 562 ARAAHAHEFILRLPHGYDSMVGERGQTLSGGERQRISIARALLIDPHILILDEATSSVDT 621 Query: 642 ESEKIIQDNMRQICAGRTVLIIAHRLSAVRDAHRIIVLDKGQIVESGRHEELLRKPGGLY 701 +E+ IQ + + GRT + IAHRLS +R A RI+V+D+GQIVE G H+ELL++ G Y Sbjct: 622 TTEREIQKALDNLVRGRTTIAIAHRLSTLRRADRIVVMDRGQIVEVGSHDELLQREGAYY 681 >gi|152982656|ref|YP_001351943.1| ABC-type multidrug transport system, ATPase and permease components [Janthinobacterium sp. Marseille] Length = 658 Score = 255 bits (651), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 186/565 (32%), Positives = 294/565 (52%), Gaps = 21/565 (3%) Query: 161 LLISLALQLIGLCTPLFFQVVMDK---VLVN-----HAMKTLNVIAIGLIA-ATLFEAIL 211 +L +L + L PL +D+ +LVN ++ ++ GLI IL Sbjct: 70 ILAALGAAVFNLLMPLLLGHAVDQAGHLLVNARLGADVVRNALLVTGGLIVLVCAVRGIL 129 Query: 212 GGIRTALFSHTSSKIDVELGSKLFAHLLSLPITYFQSRRAGDSIAR-IRELENIRSFLTS 270 G++ L + K+ +L + L L +Y GD IAR + +LE +R+FL Sbjct: 130 TGLQGYLGETLAQKVGYDLRMAFYEKLQRLSFSYHDKIHTGDLIARGMLDLEGVRAFLEF 189 Query: 271 NAMTLLLDLVFSFVFLGVMLWYSVTLSLIVLASIPLYLGLSFVFTPI-LRARLDDKFNKS 329 + ++ + V +L VTL L+ L+ +P ++ + T + LR Sbjct: 190 GVLRIITLTLLLGVGSWRLLSIDVTLGLLALSFVP-FVAWNAARTGLRLRVSWQRLQKMM 248 Query: 330 AENQAFLVESLTGMDTIKSLAVEPRWQQKWDK--QLAAYVSAGLSTANIGLLASGSVSLV 387 +E + E+L G+ +++ K+DK +A +S T +G +++ ++ Sbjct: 249 SEMTLNMEENLQGVRVVRAFTSRLHEMSKFDKISDVALRLSNQRITERMGNMSAMVLAYY 308 Query: 388 SKLVTAAIMWLGATLVIDQQLTVGELVAFNMLAGQVAAPVLRLAQLWNDFQQVGISMSRL 447 + + A ++W+G V LTVG L F + P+ ++ + N + S +RL Sbjct: 309 TSM--ALVLWVGGQRVASGALTVGSLTEFLTFITILQQPLRQIGMIVNASARATGSGARL 366 Query: 448 GDVLDTRPEVTGKKT--RLPRLSGAIIFDQVSFRYR--PETSEVLRALTLNIRPGEVVGI 503 +VLDT PE+ + L G + F+ VSF Y P VL+ ++ +R GEV+GI Sbjct: 367 FEVLDTDPEIKDAENAHDLKIDKGLLRFESVSFAYGHGPNDRTVLKDISFEVRKGEVLGI 426 Query: 504 VGRSGSGKSTLTKLVQRLYVCDRGKVMIDGQDLAVIDTASLRQQIGVVLQENMLFSRSIR 563 VG GSGKSTL L+ R Y G++ IDGQDL + +SLR + +V QEN LF S+ Sbjct: 427 VGAPGSGKSTLAHLIPRFYEVSGGRITIDGQDLRALSLSSLRSAVSLVQQENFLFDTSVH 486 Query: 564 DNIALTDPSLPIEAVIAAAKLAGAHEFICELPEAYDTLVGEHGTGLSGGQRQRIAIARAL 623 +N+A +P E VI AA +A HE + +LP+ Y T VGE G LSGGQRQR+ IAR L Sbjct: 487 NNVAYPEPQAGEERVIEAASVAQIHEHVEQLPKGYTTRVGERGVALSGGQRQRMTIARGL 546 Query: 624 ISNPAILIFDEATSALDYESEKIIQDNMRQICAGRTVLIIAHRLSAVRDAHRIIVLDKGQ 683 + P+IL+ D++T+A+D +E+ ++ ++ +IIAHRLS+++ A +IIVLD+G+ Sbjct: 547 LDQPSILVLDDSTAAIDPATEQRVRAALQSSLKDTATIIIAHRLSSLKHADQIIVLDEGR 606 Query: 684 IVESGRHEELLRKPGGLYAHLHGLQ 708 IVE G H EL+ GG YA L LQ Sbjct: 607 IVERGTHAELI-AAGGRYAELWSLQ 630 >gi|152981213|ref|YP_001352884.1| ABC-type multidrug transport system, ATPase and permease components [Janthinobacterium sp. Marseille] Length = 595 Score = 247 bits (631), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 188/541 (34%), Positives = 298/541 (55%), Gaps = 30/541 (5%) Query: 189 HAMKTLNVIAIGLIAATLFEAILGGIRTALFSHTSSKIDVELGSKLFAHLLSLPITYFQS 248 H ++N I L AI R + S ++ ++ + +++H+++ +F++ Sbjct: 66 HDTSSINTYFIALFGVACVLAIATAARFYMVSWLGERVTADVRNAVYSHVVTQSPQFFET 125 Query: 249 RRAGDSIARIRELENIRSFLTSNAMTLLLDLVFSFVFLGVMLWY-SVTLSLIVLASIPLY 307 ++G+ ++RI + L ++++ L F VML++ S+ LS I+L + Sbjct: 126 TQSGEVLSRITTDTTLIQTLIGTSISMALRNALLFAGGLVMLFFTSIKLSSIILVT---- 181 Query: 308 LGLSFVFTPIL------RARLDDKFNKSAENQAFLVESLTGMDTIKSLAVEPRWQQKWDK 361 L+FV PI+ R D ++ A+ A E L M T+++ E +++ + Sbjct: 182 --LAFVVLPIVWFGRRVRTLSRDSQDRVADASALAGEILNAMPTVQAYTHEKIEAKRFGQ 239 Query: 362 QLAAYVSAGLSTANIGLLASGSVSLVSKLVTAA----IMWLGATLVIDQQLTVGELVAFN 417 V TA + A +++++ L+ ++WLGA VID ++ G+L F Sbjct: 240 T----VENAFKTAMRRIRARSLLTMIAILLVFGAIVFVLWLGAHAVIDGSMSGGQLGQFI 295 Query: 418 MLAGQVAAPVLRLAQLWNDFQQVGISMSRLGDVLDTRPEVTGKKT--RLP--RLSGA-II 472 + + VA + L+++ D Q+ + RL ++L + ++ T LP R +GA + Sbjct: 296 LYSAIVAGAIGALSEVLGDAQRAAGATERLLELLSVQSPISSPATPRSLPPRRANGAALT 355 Query: 473 FDQVSFRY--RPETSEVLRALTLNIRPGEVVGIVGRSGSGKSTLTKLVQRLYVCDRGKVM 530 D V+F Y RP T L L+++I+ GE V IVG SG+GK++L +L+ R Y G + Sbjct: 356 LDLVTFHYPSRPLTP-ALSNLSVSIQAGETVAIVGPSGAGKTSLFQLLLRFYDPQEGVIE 414 Query: 531 IDGQDLAVIDTASLRQQIGVVLQENMLFSRSIRDNIALTDPSLPIEAVIAAAKLAGAHEF 590 +DG D+ +D +LR IG+V Q+ ++FS + +NI P E VIAAA+LA AHEF Sbjct: 415 LDGIDIRELDLHALRNTIGIVPQDTVIFSANAMENIRYGRPEATDEEVIAAARLAAAHEF 474 Query: 591 ICELPEAYDTLVGEHGTGLSGGQRQRIAIARALISNPAILIFDEATSALDYESEKIIQDN 650 I LPE Y + +GE G LSGGQRQRIAIARAL+ NP +L+ DEATSALD ESE+++Q Sbjct: 475 IERLPEGYLSFLGERGVRLSGGQRQRIAIARALLKNPPLLLLDEATSALDAESERLVQGA 534 Query: 651 MRQICAGRTVLIIAHRLSAVRDAHRIIVLDKGQIVESGRHEELLRKPGGLYAHLHGLQMT 710 + GRT L+IAHRL+ V+ A RIIV++ G+IVE+G H L+ GGLYA L LQ Sbjct: 535 LEAAMVGRTTLVIAHRLATVQRADRIIVMEHGKIVETGTHASLV-AAGGLYASLAALQFG 593 Query: 711 Q 711 Q Sbjct: 594 Q 594 >gi|152982174|ref|YP_001352225.1| ABC-type multidrug transport system, ATPase and permease components [Janthinobacterium sp. Marseille] Length = 578 Score = 242 bits (618), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 177/580 (30%), Positives = 299/580 (51%), Gaps = 42/580 (7%) Query: 153 YRKALGEVLLISLALQLIGLCTPLF---FQVVMDKVLVNHAMKTLNVIAIGLIAATLFEA 209 Y+K L LL + + L P+F +V++DK +L ++ + ++ + Sbjct: 17 YKKRLAVALL---GMIMTALTEPMFPAVMRVLLDKGFGGKPSFSLWLVPVAIVGIFVLRG 73 Query: 210 ILGGIRTALFSHTSSKIDVELGSKLFAHLLSLPITYFQSRRAGDSI-ARIRELENIRSFL 268 I T + + SS++ L ++F +L +P+ ++ + G I + + E++ I + Sbjct: 74 ISTFTTTYMMTWVSSRLLTTLRKQMFERMLDVPLGFYATHSVGRVINSMMFEVQQIIEMI 133 Query: 269 TSNAMTLLLDLVFSFVFLGVMLWYSVTLSLIVLASIPLYLGLSFVFTPILRARLDDKFNK 328 T +++ D + V L + W + L+L+ L +PL ++RA Sbjct: 134 TKVYTSIIRDSLTVIVLLSFLFWLNWRLTLVALVLLPL-------IAIVVRATGRRLRRL 186 Query: 329 SAENQAF------LVESLTGMDTIKSL-----AVEPRWQQKWDK------QLAAYVSAGL 371 + E Q ++E T + + + E R++ + DK ++A ++A Sbjct: 187 TREYQTVNGEMTQVIEETTRANQVIKIFGGHRYEEERFEVRADKLRGYTMRMATAMAA-- 244 Query: 372 STANIGLLASGSVSLVSKLVTAAIMWLGATLVIDQQLTVGELVAFNMLAGQVAAPVLRLA 431 +T ++AS +V++V + A++ G Q TVG V+F + P+ +A Sbjct: 245 TTPVTQVMASTAVAIV---IVIALIQSG-----QNQTTVGGFVSFITAMLMLLTPLKNIA 296 Query: 432 QLWNDFQQVGISMSRLGDVLDTRPEVTGKKTRLPRLSGAIIFDQVSFRYRPETSEVLRAL 491 ++ Q+ + + ++D PE T K R +G + F ++ F Y + + L+ + Sbjct: 297 EVNGPLQRGLTAAEAVFKLIDAEPERTNGKDLAARAAGRLDFVRLGFTYPGQQTMALQDI 356 Query: 492 TLNIRPGEVVGIVGRSGSGKSTLTKLVQRLYVCDRGKVMIDGQDLAVIDTASLRQQIGVV 551 L+++PGE + VG SG GKSTL LV Y G++ +DG + I +SLR+QI +V Sbjct: 357 NLSVQPGETIAFVGMSGGGKSTLVNLVPGFYSATAGEIQLDGVSIEEISLSSLRKQIAMV 416 Query: 552 LQENMLFSRSIRDNIALTDPSLPIEAVIAAAKLAGAHEFICELPEAYDTLVGEHGTGLSG 611 Q +LF +I NIA D + ++AAA A E I LPE +T++G++G+ LSG Sbjct: 417 SQHVVLFDDTIAANIAYGDANPDRTRIMAAAHAAHLDEVIAGLPEGLETMIGDNGSRLSG 476 Query: 612 GQRQRIAIARALISNPAILIFDEATSALDYESEKIIQDNMRQICAGRTVLIIAHRLSAVR 671 GQRQR+AIARA+ + ILI DEATSALD ESE+ +Q + ++ GRT L+IAHRLS + Sbjct: 477 GQRQRLAIARAIYKDAPILILDEATSALDSESERAVQAALDELMKGRTTLVIAHRLSTIE 536 Query: 672 DAHRIIVLDKGQIVESGRHEELLRKPGGLYAHLHGLQMTQ 711 A RI VL +G IVE G H+ELL + G+YA+L+ LQ + Sbjct: 537 RADRIAVLAEGHIVELGSHQELLAR-NGVYANLYHLQFAK 575 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.324 0.138 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,529,685 Number of extensions: 60151 Number of successful extensions: 462 Number of sequences better than 1.0e-08: 55 Number of HSP's gapped: 382 Number of HSP's successfully gapped: 57 Length of query: 720 Length of database: 1,221,021 Length adjustment: 90 Effective length of query: 630 Effective length of database: 888,291 Effective search space: 559623330 Effective search space used: 559623330 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 133 (55.8 bits)