BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3410.p (308 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981664|ref|YP_001352876.1| LysR family transcriptional reg... 421 e-119 gi|152982593|ref|YP_001352341.1| LysR family transcriptional reg... 154 5e-39 gi|152980366|ref|YP_001352038.1| OxyR hydrogen peroxide-inducibl... 90 1e-19 gi|152982492|ref|YP_001352911.1| LysR family transcriptional reg... 85 5e-18 gi|152981587|ref|YP_001352513.1| LysR family transcriptional reg... 81 6e-17 >gi|152981664|ref|YP_001352876.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 301 Score = 421 bits (1083), Expect = e-119, Method: Compositional matrix adjust. Identities = 209/299 (69%), Positives = 250/299 (83%), Gaps = 2/299 (0%) Query: 4 SIDLRLLRYFIAVAEEGHLTKAAERIGIQQPPLSQQIRLLERELGVTLFNRLPRGMELTD 63 SIDLRLLRYF+ VAEEGHLTKAA+RIGIQQPPLSQQIR LE+ELGVTLF R+PRGMELT+ Sbjct: 3 SIDLRLLRYFVIVAEEGHLTKAAQRIGIQQPPLSQQIRALEKELGVTLFRRMPRGMELTE 62 Query: 64 SGTALLTDARALLAQLDTTVASVRRIAQGKMGRIAVGFTESASLHPFVHSVIRAFRADAP 123 SG ALL DAR +L Q++TT+ VRRI+ G+ GR+AVGFTESA+LHPF+ +VIRAFR +P Sbjct: 63 SGQALLIDARLILEQVNTTIEGVRRISLGESGRLAVGFTESAALHPFIPAVIRAFRQKSP 122 Query: 124 DVVMTVEESNTNELIEALRAKRLDLAFVRSPVGDASGLTIETMLVEEMVAALPIDHPLAE 183 V+M VEESNTNEL+E LR RLD+AF+RSP+G A+GL +ETMLVEEM+ ALPI H LA+ Sbjct: 123 GVIMAVEESNTNELVEDLRHNRLDVAFIRSPIGSAAGLKMETMLVEEMIVALPITHRLAQ 182 Query: 184 HGKRKSIALHALAEQAFIMTRRPNGPGLYDTIIAACHAAGFSPQVTQEARKNLSTLSLVA 243 +RKS+ L ALAE FI+ RRP+GPGLYD++IAAC AAGFSP+V QEA+KNLSTLSLVA Sbjct: 183 --RRKSLPLTALAEDDFILNRRPSGPGLYDSVIAACRAAGFSPRVVQEAKKNLSTLSLVA 240 Query: 244 AGVGVAVIPASMTRVNAEGVVYLKLTGAPELKAPLHLAYRTGSVSGAARLMREEALKLS 302 AG+GV+++PASM V + VVYLKL AP+L+APLHLAYR SGAA M EA KL+ Sbjct: 241 AGLGVSIVPASMRHVQLKEVVYLKLEQAPDLRAPLHLAYRDEPQSGAAERMIIEARKLA 299 >gi|152982593|ref|YP_001352341.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 297 Score = 154 bits (390), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 101/290 (34%), Positives = 161/290 (55%), Gaps = 12/290 (4%) Query: 4 SIDLRLLRYFIAVAEEGHLTKAAERIGIQQPPLSQQIRLLERELGVTLFNRLPRGMELTD 63 +I+LR LR+F+ VAEE H +AA R+ + QPPLSQ I+ LE LGV LF R R + LT Sbjct: 2 NIELRQLRHFVTVAEEMHFGRAALRLHMTQPPLSQSIQALEALLGVQLFRRTSRSVALTP 61 Query: 64 SGTALLTDARALLAQLDTTVASVRRIAQGKMGRIAVGFTESASLHPFVHSVIRAFRADAP 123 +G ALL +A+ +L Q +RR A G GR+++ F +A H +R FR P Sbjct: 62 AGIALLPEAQRILQQTAALPDLMRRAASGASGRLSLAFVSTADYSVLPH-FLREFREAYP 120 Query: 124 DVVMTVEESNTNELIEALRAKRLDLAFVRSPVGDASGLTIETM--LVEEMVAALPIDHPL 181 V + + E+ T+ ++ L R+D+ + P+ D + L ++ + L E ++ A+P L Sbjct: 121 QVEIDLREATTDVQLDELAQGRIDVGLLIPPLPDKAKLQLDYLPVLSEPLILAVP--KGL 178 Query: 182 AEHGKRKSIALHALAEQAFIMTRRPNGPGLYDTIIAACHAAGFSPQVTQEARKNLSTLSL 241 ++++AL A+AE I+ R P +D I+A AG +P + QEA + + + L Sbjct: 179 KAVRGKQTVALQAVAELPLIIFPRRIAPAFHDAILACYRDAGLTPHIGQEAIQMQTIIGL 238 Query: 242 VAAGVGVAVIPASMTRVNAEGVVYLKLTGAPELKAPL---HLAYRTGSVS 288 V+AG+G+A++P S++ + GV Y L K PL +A+R + S Sbjct: 239 VSAGMGIALVPQSVSNLKRPGVDYKALAD----KTPLVETGMAWRRDNTS 284 >gi|152980366|ref|YP_001352038.1| OxyR hydrogen peroxide-inducible genes activator [Janthinobacterium sp. Marseille] Length = 331 Score = 90.1 bits (222), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 93/298 (31%), Positives = 145/298 (48%), Gaps = 31/298 (10%) Query: 10 LRYFIAVAEEGHLTKAAERIGIQQPPLSQQIRLLERELGVTLFNRLPRGMELTDSGTALL 69 L+Y +AVA E H AAE + QP LS I+ LE ELGVTLF R + +T G ++ Sbjct: 22 LKYIVAVAREKHFGHAAEACFVAQPTLSVAIKKLEDELGVTLFERGGSEISMTPLGAQIV 81 Query: 70 TDARALLAQLDTTVASVRRIA-QGK---MGRIAVGFTESAS---LHPFVHSVIRAFRADA 122 A +L Q A+++ IA Q K +G +G + + L P V ++I Sbjct: 82 AQAERVLEQ----TAAIKEIAKQNKDPLVGPFRLGIIYTIAPYLLPPLVKTIIER----V 133 Query: 123 PDVVMTVEESNTNELIEALRAKRLDLAFVRSPVGDASGLTIETMLVEEMVAALPIDHPLA 182 P + + ++E+ T +L+E LR LD A V P D GL ++ + E V A+P H A Sbjct: 134 PQMPLVLQENFTVKLLELLRQGELDAAIVALPFPD-QGLLVQPVYDEPFVVAVPKHHKWA 192 Query: 183 EHGKRKSIALHALAEQAFIMTRRPNGPGLYDTIIAAC-HAAGFSPQVTQEAR----KNLS 237 R S++ L + ++ NG D ++ C + FS AR +L Sbjct: 193 ---NRDSVSTDDLKSETMLLLG--NGHCFRDQVLEVCPEMSRFSTSGDGIARTFEGSSLE 247 Query: 238 TL-SLVAAGVGVAVIP-ASMTRVNA-EGVV-YLKLTGAPELKAPLHLAYRTGSVSGAA 291 T+ +VA+G+G+ V+P AS+ + A +G++ Y+ T P + L +R GAA Sbjct: 248 TIRHMVASGIGITVLPQASIPDMQAKDGMLRYIPFT-QPGPSRRVVLVWRKSFTRGAA 304 >gi|152982492|ref|YP_001352911.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 302 Score = 85.1 bits (209), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 87/301 (28%), Positives = 146/301 (48%), Gaps = 14/301 (4%) Query: 4 SIDLRLLRYFIAVAEEGHLTKAAERIGIQQPPLSQQIRLLERELGVTLFNRLPRGMELTD 63 +I LR LR F+ VAE G T AAE +G+ Q LS +R LE LG+ LF+R R +ELTD Sbjct: 2 NITLRQLRAFVTVAETGKFTLAAELLGVSQSSLSLLVRDLENLLGLRLFDRHTRRLELTD 61 Query: 64 SGTALLTDARALLAQLDTTVASVRRIAQGKMGRIAVGFTESASLH--PFVHSVIRAFRAD 121 +G LL A+ L L + V + R + K GR+ + + SLH + ++++F Sbjct: 62 AGHDLLPVAQKTLMDLLSVVENSRDLLALKKGRVTIA---AGSLHAATVIPDLLKSFNRR 118 Query: 122 APDVVMTVEESNTNELIEALRAKRLDLAFVRSPVGDASGLTIETMLVEEMVAALPIDHPL 181 P + + VE+ ++ E + A +D+ + GD S L + + ++ + +H L Sbjct: 119 YPGIRVIVEDVAERQVRELIVAGTVDVGIGMTLDGDNSMLA-QVIGRDKYAVLMHKEHQL 177 Query: 182 AEHGKRKSIALHALAEQAFIMTRRPNGPGLY-DTIIAACHAAGFSPQVTQEARKNLSTLS 240 ++K+I +A I+ + P+ Y D +A G + E + Sbjct: 178 M---RKKTITWQDIAATQPILLKPPSLIRTYLDQHLARV---GITLTPAYEVALPWTMTG 231 Query: 241 LVAAGVGVAVIPASMTRVNAEGVVYLKLTGAPELKAPLHLAYRTGS-VSGAARLMREEAL 299 +V AGVGVA++ + V + L+ AP ++ L + R G +S AA+ +R L Sbjct: 232 MVRAGVGVAIVTTGVLPVAERMGLELRTISAPVIERELAVLTRAGYPLSPAAQSLRTHLL 291 Query: 300 K 300 + Sbjct: 292 E 292 >gi|152981587|ref|YP_001352513.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 289 Score = 81.3 bits (199), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 63/229 (27%), Positives = 108/229 (47%), Gaps = 11/229 (4%) Query: 5 IDLRLLRYFIAVAEEGHLTKAAERIGIQQPPLSQQIRLLERELGVTLFNRLPRGMELTDS 64 ++LR LRYF+A A+ T+A+E + I QP LS QI+ +E ELG+ LF+R+ R ++LT + Sbjct: 1 MELRHLRYFLAAAQSQSFTRASESLHITQPTLSHQIKQIEDELGIQLFDRVGRVVKLTTA 60 Query: 65 GTALLTDARALLAQLDTTVASVRRIAQGKMGRIAVGFTES-ASLHPFVHSVIRAFRADAP 123 G A+ L ++D + ++ + K GR+ G S + H + ++ F P Sbjct: 61 GELFQVYAKRALLEVDAGLDALNELENLKHGRVTFGVLSSFGTFH--LPPILADFNKVYP 118 Query: 124 DVVMTVEESNTNELIEALRAKRLDLAFVRSPVGDASGLTIETMLVEEMVAALPIDHPLAE 183 + +TV + E+ E L L +P + +E + + + HPL Sbjct: 119 GIKITVLRLRSGEIEERLLDGDLHFGVAYAP-SSTEQINVEPLFTVPLALVVGDHHPLV- 176 Query: 184 HGKRKSIALHALAEQAFIM-TRRPNGPGLYDTIIAACHAAGFSPQVTQE 231 I L+ L E +M + N + D I+ A G +P++ E Sbjct: 177 --GSAGITLNELNEHELVMLSDEYNSRKMMDAILLAN---GITPRIVME 220 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.133 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 610,310 Number of extensions: 22121 Number of successful extensions: 143 Number of sequences better than 1.0e-08: 27 Number of HSP's gapped: 137 Number of HSP's successfully gapped: 27 Length of query: 308 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 225 Effective length of database: 914,170 Effective search space: 205688250 Effective search space used: 205688250 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)