BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3409.p (209 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981870|ref|YP_001352877.1| ChrA half sized-like protein [J... 233 8e-63 gi|152981908|ref|YP_001351867.1| ChrA half sized-like protein [J... 100 6e-23 gi|152981838|ref|YP_001352878.1| ChrA half sized-like protein [J... 68 4e-13 gi|152981658|ref|YP_001354737.1| chromate transport protein chrA... 68 4e-13 gi|152981660|ref|YP_001353631.1| chromate transport protein chrA... 60 1e-10 >gi|152981870|ref|YP_001352877.1| ChrA half sized-like protein [Janthinobacterium sp. Marseille] Length = 193 Score = 233 bits (593), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 121/171 (70%), Positives = 148/171 (86%) Query: 15 PTTREIFLGFLGLGMTAFGGALPLAQRMIVERRRWLTDAEFVELLGLCQFLPGGNIINLS 74 PT R++F GFLGLGM AFGGALPLA RM+VE +RWL ++EF ELLGLCQFLPGGN+INLS Sbjct: 20 PTLRQLFFGFLGLGMMAFGGALPLAHRMLVEDKRWLDESEFTELLGLCQFLPGGNMINLS 79 Query: 75 VALGMKFRGWKGALAGITGLIAVPSMVVILLGMIYQHFQHDPNVKHLFAGLAAAAAGLLI 134 VA+GM+FRG KGA I GL+A+PS+V+++LGM+Y+ FQ+D V H+FAGLAAAAAGLL+ Sbjct: 80 VAVGMRFRGVKGAFVSIMGLVAMPSVVLVMLGMLYERFQNDAQVTHVFAGLAAAAAGLLV 139 Query: 135 QMAVKITLPLRKNMVLAAVAVACFIAIALLRIPLLWVMLVMTPISIFLTAR 185 MA+KI LPLRK ++A VAV CF+AIALLR PLLWVMLVMTP+SI++TAR Sbjct: 140 SMAIKIALPLRKKYLMALVAVICFVAIALLRWPLLWVMLVMTPLSIWVTAR 190 >gi|152981908|ref|YP_001351867.1| ChrA half sized-like protein [Janthinobacterium sp. Marseille] Length = 196 Score = 100 bits (249), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 62/181 (34%), Positives = 105/181 (58%), Gaps = 5/181 (2%) Query: 10 PERPIPTTR-EIFLGFLGLGMTAFGGALPLAQRMIVERRRWLTDAEFVELLGLCQFLPGG 68 P RP P + ++F+ F L + FGG L + QR +VE+++WLT EFVE + Q +PG Sbjct: 12 PPRPGPKSLVDLFISFTLLALQGFGGVLAIVQRELVEKKKWLTPEEFVEDWAVAQIMPGP 71 Query: 69 NIINLSVALGMKFRGWKGALAGITGLIAVPSMVVILLGMIYQHFQHDPNVKHLFAGLAAA 128 N++N+S+ +G + G GA+A + G++ +P ++++ + ++Y F H P V + A Sbjct: 72 NVVNMSIIVGGRHFGLPGAMAALAGMLCLPLLLILSIAIMYAPFAHYPPVVDALRAMGAV 131 Query: 129 AAGLLIQMAVKITLPLRKN----MVLAAVAVACFIAIALLRIPLLWVMLVMTPISIFLTA 184 AAGL++ VK+ L+ N + A + + CF IALLR+PL++ + + I L Sbjct: 132 AAGLILATGVKLARALKSNPLGPRLCALLCLLCFSGIALLRLPLVYPLFGLGIIGCLLAY 191 Query: 185 R 185 R Sbjct: 192 R 192 >gi|152981838|ref|YP_001352878.1| ChrA half sized-like protein [Janthinobacterium sp. Marseille] Length = 176 Score = 68.2 bits (165), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 51/160 (31%), Positives = 77/160 (48%), Gaps = 8/160 (5%) Query: 20 IFLGFLGLGMTAFGGA---LPLAQRMIVERRRWLTDAEFVELLGLCQFLPGGN--IINLS 74 +FL F L + AFGG LP QR +VE +W++ EF L L Q PG N I+NL Sbjct: 8 LFLIFSQLSLLAFGGGNAILPEMQRQVVEVHQWMSAKEFSALFALSQAAPGPNMMIVNL- 66 Query: 75 VALGMKFRGWKGALAGITGLIAVPSMVVILLGMIYQHFQHDPNVKHLFAGLAAAAAGLLI 134 +G + GW G L S++ I+ ++ F+ P ++ +G+ AG++ Sbjct: 67 --VGWQVAGWAGMLVTAIAKFGPSSLLTIMSLHAWERFKDKPWRAYIQSGMVPVTAGIVA 124 Query: 135 QMAVKITLPLRKNMVLAAVAVACFIAIALLRIPLLWVMLV 174 AV I N +L A+ V + RI LW++LV Sbjct: 125 ASAVVIAHASDTNWLLTAITVVSALLAWKTRIHPLWLLLV 164 >gi|152981658|ref|YP_001354737.1| chromate transport protein chrA [Janthinobacterium sp. Marseille] Length = 457 Score = 67.8 bits (164), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 74/148 (50%), Gaps = 4/148 (2%) Query: 22 LGFLGLGMTAFGGALPLAQRMIVERRRWLTDAEFVELLGLCQFLPGGNIINLSVALGMKF 81 LGF+G G A + L R +VE+RRW+++ F+ L C LPG L+ +G Sbjct: 33 LGFIGFGGPA--AQISLMHRELVEQRRWISERRFLHALNYCMLLPGPEGQQLATYMGWLM 90 Query: 82 RGWKGALAGITGLIAVPSM-VVILLGMIYQHFQHDPNVKHLFAGLAAAAAGLLIQMAVKI 140 KG +A L +PS+ +I L +Y + H P + LF G+ A +++ +I Sbjct: 91 HRTKGGIAAGV-LFVLPSLFFLIALSWLYIAYGHVPLIAGLFYGIKPAITAVVVHAVHRI 149 Query: 141 TLPLRKNMVLAAVAVACFIAIALLRIPL 168 KN ++ A+A A F+AI + +P Sbjct: 150 GSRALKNNLMWAIAAASFVAIFAMNVPF 177 >gi|152981660|ref|YP_001353631.1| chromate transport protein chrA [Janthinobacterium sp. Marseille] Length = 477 Score = 60.1 bits (144), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 62/190 (32%), Positives = 96/190 (50%), Gaps = 11/190 (5%) Query: 22 LGFLGLGMTAFGGALPLAQRMIVERRRWLTDAEFVELLGLCQFLPGGNIINLSVALGMKF 81 LGFLG G A + L R +VE+RRW+++ F+ L C LPG L+ +G Sbjct: 54 LGFLGFGGPA--AQISLMHRELVEQRRWISEKRFLHALNYCMLLPGPEAQQLATYMGWLM 111 Query: 82 RGWKGALAGITGLIAV-PSM-VVILLGMIYQHFQHDPNVKHLFAGLAAAAAGLLIQMAVK 139 KG +A GL+ V PS+ +I L +Y + H P + LF G+ A ++I + Sbjct: 112 HRSKGGIA--AGLLFVLPSLFFLITLSWLYIAYGHLPLIAGLFYGIKPAITAVVIHAVHR 169 Query: 140 ITLPLRKNMVLAAVAVACFIAIALLRIPLLWVMLVMTPISIFLTARY-GERFAAKPQVAA 198 I KN ++ A+A A FIAI + IP +++ + +L +RY ++F+A Sbjct: 170 IGSRALKNGMMWAIAAASFIAIFVFNIPFP-LIIACAALLAYLGSRYMPQKFSANGS-HG 227 Query: 199 KPDAVKQEGA 208 +PD K GA Sbjct: 228 QPD--KSYGA 235 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.329 0.142 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 442,358 Number of extensions: 16048 Number of successful extensions: 55 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 56 Number of HSP's successfully gapped: 5 Length of query: 209 Length of database: 1,221,021 Length adjustment: 79 Effective length of query: 130 Effective length of database: 928,958 Effective search space: 120764540 Effective search space used: 120764540 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 127 (53.5 bits)